Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03420 ATGTCTGAACCCGCTGTCACCGACGATAAAACAATCACCACCACCACATTGGTTCCATCTAGCTTATCGCCGTCGCTCAACATCGACGAATTATCGATCGACGAAAACAAGAAACCTCCGAAGCTATTAGACGATCCGGAAGACTCCAATATCCAAGCGGTTACTTCTGGCGACACGCCGTACACCTCGGCGGCGAGGTTCGAGGACCTGAACCTGTCAGAGGAGCTTTTGAAAGGACTCTACGTTGAAATGAAGTTTCAGAAACCGAGCAAGATCCAAGCTATAAGCTTGCCGATGATCTTGAATCCGCCGCACCGTGATTTGATCGCTCAGGCTCACAACGGTTCCGGCAAGACCACGTGCTTTGTTTTAGGGATGCTTAGTCGTGTGGATCCTTCGACGCAAGCTCCTCAGGCTCTCTGCATTTGTCCAACGAGGGAGCTTGCTATTCAGAACACTGAAGTTCTCCGGAAGATGGGGAAGCACACAGGGATTAGCTCGGAGTGTGGCGTTCCGACAGATAGCAGGGATTCAATTCGAATTCAAAAACGGAAGTCAATTAAGGCTCAGGTGGTTATTGGGACTCCTGGCACCATCAAGAAGTGGATTTCTTTCAAGAAATTGGACTTGACCAGATTGACGATTCTTGTCTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAAGGATGATTCATTGAGGATAATGAAAGAAATAGAAAAATTCAATTCTAGCTGCCAGGTTCTTCTATTTTCTGCCACATTCAATGACATTGTCAAGAACTTTGTTGAGAGGACAGTTAAAAAGGACCATAATAAACTTTTTGTTAAGAAAGAAGAGCTTTCTTTAGATACTGTGAAGCAGTATAAAGTGCGCTGCGCTGATGAGTTGTCGAAGATTGAGGTGATAAAAGATTACATATTCGAATTAGGAGAAAATGTGGGCCAAACCATCATATTCGTGCGCACGAGACAGAGTGCAAAAATGCTGCACAAGTCACTTGTCGATATGGGTTACGGGGTTACTTCGATACAAGGTGCCCTTGACCATGAAGAGAGAGACAAAATTGTCAAAGAGTTCAGAGATGGTTTGACTCAGGTTCTTATATCTACGGATGTTCTTGCTCGAGGCTTTGATCAGCAACAGGTCAATTTGGTTATCAACTATGATCTCCCAATAAAACATACTGCAGAGTATACACGGGAATTTGAGCCTGATTATGAGGTGTACTTGCACAGAGTTGGTAGGGCTGGTCGATTTGGCCGCAAGGGGGCTGTGTTTAACCTAATATATGATGAAAAAGATGAAAGGCTGATGTCAAAGATCGAGAACCATTTTGGCACCCGTGTATCAGAGGTACGAGAAAAAAGTGTTGAAGACTATAAAGCAGCTCTCAAGGAAGCTGGGTTATTACAAGGTCATTTATAA 1434 0.4421 MSEPAVTDDKTITTTTLVPSSLSPSLNIDELSIDENKKPPKLLDDPEDSNIQAVTSGDTPYTSAARFEDLNLSEELLKGLYVEMKFQKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPSTQAPQALCICPTRELAIQNTEVLRKMGKHTGISSECGVPTDSRDSIRIQKRKSIKAQVVIGTPGTIKKWISFKKLDLTRLTILVFDEADQMLAEDGFKDDSLRIMKEIEKFNSSCQVLLFSATFNDIVKNFVERTVKKDHNKLFVKKEELSLDTVKQYKVRCADELSKIEVIKDYIFELGENVGQTIIFVRTRQSAKMLHKSLVDMGYGVTSIQGALDHEERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPIKHTAEYTREFEPDYEVYLHRVGRAGRFGRKGAVFNLIYDEKDERLMSKIENHFGTRVSEVREKSVEDYKAALKEAGLLQGHL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03420 477 PANTHER DEAD-BOX HELICASE DBP80 44 453 - -
Aip06g03420 477 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 99 275 IPR014001 -
Aip06g03420 477 Pfam DEAD/DEAH box helicase 91 263 IPR011545 GO:0003676|GO:0005524
Aip06g03420 477 MobiDBLite consensus disorder prediction 28 57 - -
Aip06g03420 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 441 IPR027417 -
Aip06g03420 477 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 304 464 IPR001650 -
Aip06g03420 477 SMART ultradead3 85 291 IPR014001 -
Aip06g03420 477 MobiDBLite consensus disorder prediction 31 45 - -
Aip06g03420 477 CDD DEADc_DDX19_DDX25 72 271 - -
Aip06g03420 477 CDD SF2_C_DEAD 288 432 - -
Aip06g03420 477 Pfam Helicase conserved C-terminal domain 301 423 IPR001650 -
Aip06g03420 477 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 44 453 - -
Aip06g03420 477 Gene3D - 44 281 IPR027417 -
Aip06g03420 477 SMART helicmild6 330 423 IPR001650 -
Aip06g03420 477 Gene3D - 282 471 IPR027417 -
Aip06g03420 477 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 65 94 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03420 Aip-Chr6 131125423 131128407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03420 67 455 Eukaryotic Initiation Factors Gene Family AT1G72730 37.056 2.11e-69 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03420 K18655 - gmx:100778091 709.523