Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03404 ATGGACCGTAGCGCCTCAAAGGCCCTTGATGATGACACTGCCATGTTCATCAACATGGCACAAGAGCTCAAGGAAGAAGGCAACAGGCTATATCAGAAGAAGGATCATGAAGCTGCCATGTTGAAGTTTGAGAAGGCTTTGAAGCTCCTACCGAAGAATCACATTGATGCTGCACACCTTCACACAAGTATGGCCGTCTGTTACATGCAAATGGGACTAGGGGAGTACCCTCATGCCATCAACGAATGCAATATGGCGTTAGAAGTCTCGCCTAGATATAGCAGGGCTCTGTTGAAGAGGGCAAAGTGCTATGCGGCCTTGAATCGGTTGGATTTGGCGATGAGGGATGTTAGGATTGTTTTGAATTGGGAGCCTAATAACCTTACAGCATTGGAGATCCAGGATAGTCTGAGAATTACAATGGAAGAAAAGGGTATCACTATAGATGAGACTGAGATTGCTTTGGCTACAATTGCAGAGCCTCCAGGTGCCCGGTTGCGAAAAGTGGTGAGGGAGAAGCTAAAGAAGAAGAAAGGTCATCACCAGAAAAGTGACGAGAAGATGGAGGAGGATAAGGAGGTTGTGCACAAGGAGGTGGTTGGTGTCATGATAAAGAATCACAGTTCTAATACAACAGCACTTGGAGGGTTCAAAATTGACGAGATAGTGCAAGCATGGAATGAGATGTATGATGGGTGGCAATTTGATGTTCCATCATTTCGACTTGAACCGTTGTTTCGTCGGCGTGTTCCAAAACTACATGACATCTTGGAGCAATTTTGA 783 0.4559 MDRSASKALDDDTAMFINMAQELKEEGNRLYQKKDHEAAMLKFEKALKLLPKNHIDAAHLHTSMAVCYMQMGLGEYPHAINECNMALEVSPRYSRALLKRAKCYAALNRLDLAMRDVRIVLNWEPNNLTALEIQDSLRITMEEKGITIDETEIALATIAEPPGARLRKVVREKLKKKKGHHQKSDEKMEEDKEVVHKEVVGVMIKNHSSNTTALGGFKIDEIVQAWNEMYDGWQFDVPSFRLEPLFRRRVPKLHDILEQF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03404 260 SUPERFAMILY TPR-like 15 132 IPR011990 GO:0005515
Aip06g03404 260 ProSiteProfiles TPR repeat profile. 20 53 IPR019734 GO:0005515
Aip06g03404 260 PANTHER PROTEIN CLMP1 200 259 IPR044517 -
Aip06g03404 260 PANTHER PROTEIN CLMP1 3 198 IPR044517 -
Aip06g03404 260 PANTHER PROTEIN PHOX4 200 259 - -
Aip06g03404 260 PANTHER PROTEIN PHOX4 3 198 - -
Aip06g03404 260 SMART tpr_5 94 127 IPR019734 GO:0005515
Aip06g03404 260 SMART tpr_5 58 93 IPR019734 GO:0005515
Aip06g03404 260 SMART tpr_5 20 53 IPR019734 GO:0005515
Aip06g03404 260 Gene3D Tetratricopeptide repeat domain 17 146 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03404 Aip-Chr6 130906318 130907207 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03404 8 143 Calmodulin-binding Proteins AT3G25230 28.966 2.48e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03404 - - aip:107605387 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03404 06 130906318 130907207 Aip08g03117 08 121297471 121300173 PCT