Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03401 ATGGTGTATGAGTGGAAGGGATTCATCCTCTTTTACTTAAATGTTAATGGTTTGATCTTCTTTTTGGAAGTTGTATTTCTCTCCTTAACGATTGATGTTAATGCAGGGAATAGTTCATGCAAAATTGCCGCATCATTGTGTCATTATGATGAAAATGATGATGATGATTGTGTGAGTATTTCTGGTCTGAGCATGCATGTTGCTGCCAAGAGTGCTTCATCAAGTGTCTTCTCTAGTCCAGTCACTAGTCCACATGGATCAAACAACAATGCACAACATTTCTTTGATCATCACACCATCAATAATTTCCTTCAACAATTCAATGACAATGATTTGAATTTGGATCATCATCATCATCACCACCACCTACCACAAGCTAATAATAACAAAAATAATGTTCATTTTTGCCCTGCTAGCTTAAGTACTGCTTATTCTTCTAATCCCAAAAATAACCATGTTGATGCACATCCCTTGCCACTTCCTCCTAGAGTTTCATCATCAATGAAAGGCCAATGGCAGAAGGGGAAGCTAATTGGTCGCAGCACCTTTGGAAGTGTTTATCATGCAACCAACCTAGAAACTGGAGCTTCTTGTGCAATGAAGAAAGTGGATATAATTCCTGATGATCCTACATCTGCTGAGTGCATAAAGCAACTAGAACAGGAAATCAAAATCCTTCATCAACTACACCACCCAAATATAGTGCAGTATTATGGAAGTGAAATAGTGAGTGACTTCATTAATTTTTTCTTTATTTGTTCCAAGCTTTATGTTCATCCAGGATCAGTTAATAAATTTATTAGGGAGCATTGTGGAGTTATGACAGAATCTGTAGTTCGAAATTTCACAAGAAACATTCTATCTGGATTGGCCTACTTACATAGCACCAAGACTATCCACAGGGATATCAAAGGTGCAAACTTGCTTGTTAATGAATCTGGCATTGTCAAGCTTGCAGATTTTGGGATGGCCAAAATTCTTTCAGGGAATTCATATGAACTTTCTTTGAAGGGAAGTCCTTATTGGATGGCTCCTGAGGTGATGAAAGCTGCCATTAAGAATGAATCAAATCCTGATGTATGGAGCTTAGGCTGCACCATCATTGAAATGTTGTCAAGGAAAGCCTCCTTGGAGTGA 1137 0.3808 MVYEWKGFILFYLNVNGLIFFLEVVFLSLTIDVNAGNSSCKIAASLCHYDENDDDDCVSISGLSMHVAAKSASSSVFSSPVTSPHGSNNNAQHFFDHHTINNFLQQFNDNDLNLDHHHHHHHLPQANNNKNNVHFCPASLSTAYSSNPKNNHVDAHPLPLPPRVSSSMKGQWQKGKLIGRSTFGSVYHATNLETGASCAMKKVDIIPDDPTSAECIKQLEQEIKILHQLHHPNIVQYYGSEIVSDFINFFFICSKLYVHPGSVNKFIREHCGVMTESVVRNFTRNILSGLAYLHSTKTIHRDIKGANLLVNESGIVKLADFGMAKILSGNSYELSLKGSPYWMAPEVMKAAIKNESNPDVWSLGCTIIEMLSRKASLE 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03401 378 SUPERFAMILY Protein kinase-like (PK-like) 151 374 IPR011009 -
Aip06g03401 378 SMART serkin_6 172 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g03401 378 Pfam Protein kinase domain 173 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g03401 378 Gene3D Transferase(Phosphotransferase) domain 1 169 378 - -
Aip06g03401 378 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 48 372 - -
Aip06g03401 378 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 48 372 - -
Aip06g03401 378 ProSiteProfiles Protein kinase domain profile. 172 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03401 Aip-Chr6 130865621 130867768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03401 146 374 MAP Kinase Kinase Kinase AT5G66850 62.745 1.77e-105 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aip06g03401 Pkinase 9.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03401 - - aip:107605697 580.482