Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03400 ATGGGGAAGCCAACAGGGAAAAAGAAAGATCATGAAAGTCCCAAGGAAAAAGAAGCTAAGGTTCCTGCTACTAATAAGACTATGGACCGTAGCGCCTCAAAGGTCCTTGATGAAGACACTGCCATGTTCATCAACATGGCACAAGAGCTCAAGGAAGAAGGCAACAGGCTATATCAGAAGAAGGATCATGAAGCTGCCATGTTGAAGTTTGAGAAGGCTTTGAAGCTCCTACCGAAGAATCACATTGATGCTGCACACCTTCACACAAGTATGGCCGTCTGTTACATGCAAATGGGACTAGGGGAGTACCCTCATGCCATCAACGAATGCAATATGGCGTTAGAAGTCTCGCCTAGATATAGCAGGGCTCTGTTGAAGAGGGCAAAGTGCTATGCAGCGTTGAATCGGTTGGATTTGGCAATGAGGGATGTTAGGATTGTTTTGAATTGGGAGCCTAATAACCTTACAGCATTGGAGATCCAGGATAGTCTGAGAATTACAATGGAAGAAAAGGGTATCACTATAGATGAGACTGAGATTGCTTTGGCTACAATCGCAGAGCCTCTAGGTGCCCGGTTGCGAAAAGTGGTGAGGGAGAAGCTAAAGAAGAAGAAAGGTCATCACCAGAAAAGTGACGAGAAGATGGAGGAGGATAAGGAGGTTGTGCACAAGGAGGTGGTGCAAAAGGATCATGTGCAGGAGAATGTGAAGAGTCATGTTAAGGATAAGGATAAGGAAGTGGTCAAGAACACAATCGAGAAAGACAATTTGGAAGCAAGACCTGTTAAGCGGCGAGAAAAGCCGGTTACAAGGACAGTGAAGTTCATATTTGGAGAGGATATAAGATGGGCGCAGCTGCCGGTGAATTGTAGTTTGAGGATGATAAGGGATACAATAAAGGATCGGTTTCCACAATTGAAGGGTGTTCTTGTGAAGTATAAGGATCGAGAAGGTGATTTTGTTACAATAACCAATGTTGCTGATTTAAGGCTAGCTGAAAGTTCCGGTAATGTGCTGGGATCAATTCGACTTTATATTACAGAAGTGGATCCTTCACAGGAACCATCTTATGATGATAAAACCATGGTGAGTGGGGTGCCAACTTATGTTAGCAAATCAGGTGAGGATATAGAGAATGTAGCTAGGCAAAGAGCCGAACCGGTAGCAAACCGGGTGATTACTGTGGAGGACTGGCTTGTCCAGTTTGCAAGGCTGTTCAAGAACCATGTTGGGTTTGACTCTGATGCATATCTAGATATTCACGAGGTTGGAATGAAGCTATATTCCGAAGCAATGGAGGATACTGCATCGGATGATGATGCTCAAGAACTGTTTGAAATTGCAGCAGATAAATTTCAAGAAATGGCAGCTTTGGCATTGTTTAATTGGGGGAATGTTCACATGTCTAGGGCGAGGAAGCGTGTATCCTCTGCAGAGGATGGATCAAGAGAGTCTTTGGAGAGTATCAAGTCTGCATATGACTGGGCTCAAAATGAGTACACAAAAGCAGAAACGAGATACGAAGAGGCTGTGAGAATCAAACCCGACTTCTATGAAGGACTTCTTGCACTCGGGTATCAGCAGTTTGAGCAAGCAAAGCTTCATTGGTGTTATTCGGTGGCAACCAATAAGGACCTGGACATTGGTGCTTCTGAAGAGGTTTTGCAGTACTATAACAAGGCAGAGGATAGCATGGAGAAAGGCATGTTGATGTGGGAAGAGATTGAGGAGCAGCGTTTGAATGGATTATCCAAATTCGACAAATATAAAGAACAGTTAGAGAAAATGGATTTGCATAATCTTTTCCGGGATGTTTCTCCGGAGGAAGCCGAAGAGCAGGCTTCAAAGATGAGGTTACAGGTATATCTTTTATGGGGAACGTTGTTGTATGAGCGCTCTGTTGTGGAATATAAGCTAGGCCTACCCACATGGGAGGAATGCTTGGAGGTTGCTGTTGAAAAGTTTGAACTAGCTGGAGCTTCTTCGACCGACATAGGTGTCATGATAAAGAATCATAGTTCTAATACATCAGCACTTGGAGGGTTCAAAATTGACGAGATAGTGCAGCATGGAATGAGATGTATGATGGGTGGCAATTTGATGTTCCATCATTTCAACTTGAACCATTGTTTCGTCGGCGTGTTCCAAAACTACATGACATGGAGCAATTTTGAGTGTTCTTACTTAGAGTTTGTTGTTGTTTAG 2205 0.4367 MGKPTGKKKDHESPKEKEAKVPATNKTMDRSASKVLDEDTAMFINMAQELKEEGNRLYQKKDHEAAMLKFEKALKLLPKNHIDAAHLHTSMAVCYMQMGLGEYPHAINECNMALEVSPRYSRALLKRAKCYAALNRLDLAMRDVRIVLNWEPNNLTALEIQDSLRITMEEKGITIDETEIALATIAEPLGARLRKVVREKLKKKKGHHQKSDEKMEEDKEVVHKEVVQKDHVQENVKSHVKDKDKEVVKNTIEKDNLEARPVKRREKPVTRTVKFIFGEDIRWAQLPVNCSLRMIRDTIKDRFPQLKGVLVKYKDREGDFVTITNVADLRLAESSGNVLGSIRLYITEVDPSQEPSYDDKTMVSGVPTYVSKSGEDIENVARQRAEPVANRVITVEDWLVQFARLFKNHVGFDSDAYLDIHEVGMKLYSEAMEDTASDDDAQELFEIAADKFQEMAALALFNWGNVHMSRARKRVSSAEDGSRESLESIKSAYDWAQNEYTKAETRYEEAVRIKPDFYEGLLALGYQQFEQAKLHWCYSVATNKDLDIGASEEVLQYYNKAEDSMEKGMLMWEEIEEQRLNGLSKFDKYKEQLEKMDLHNLFRDVSPEEAEEQASKMRLQVYLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGASSTDIGVMIKNHSSNTSALGGFKIDEIVQHGMRCMMGGNLMFHHFNLNHCFVGVFQNYMTWSNFECSYLEFVVV 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03400 734 CDD PB1 272 347 - -
Aip06g03400 734 SUPERFAMILY CAD & PB1 domains 268 357 - -
Aip06g03400 734 Gene3D Tetratricopeptide repeat domain 414 641 IPR011990 GO:0005515
Aip06g03400 734 SMART PB1_new 270 349 IPR000270 GO:0005515
Aip06g03400 734 SMART tpr_5 121 154 IPR019734 GO:0005515
Aip06g03400 734 SMART tpr_5 85 120 IPR019734 GO:0005515
Aip06g03400 734 SMART tpr_5 47 80 IPR019734 GO:0005515
Aip06g03400 734 ProSiteProfiles PB1 domain profile. 270 349 IPR000270 GO:0005515
Aip06g03400 734 MobiDBLite consensus disorder prediction 1 24 - -
Aip06g03400 734 Gene3D - 270 345 - -
Aip06g03400 734 Gene3D Tetratricopeptide repeat domain 44 173 IPR011990 GO:0005515
Aip06g03400 734 Pfam PB1 domain 270 347 IPR000270 GO:0005515
Aip06g03400 734 MobiDBLite consensus disorder prediction 1 32 - -
Aip06g03400 734 PANTHER PROTEIN CLMP1 1 690 IPR044517 -
Aip06g03400 734 SUPERFAMILY TPR-like 46 534 IPR011990 GO:0005515
Aip06g03400 734 PANTHER PROTEIN PHOX4 1 690 - -
Aip06g03400 734 ProSiteProfiles TPR repeat profile. 47 80 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03400 Aip-Chr6 130862213 130865456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03400 37 170 Calmodulin-binding Proteins AT3G25230 29.371 1.40e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03400 - - vra:106765155 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03400 06 130862213 130865456 Aip06g03400 06 130862213 130865456 ECH