Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03363 ATGATACCAAAGAAGACGGTTGCCACAAGAAAAATTTCCTTCCACGTATTATCATTGTTGAAGAAGGCCACCAACAACTACGACGACAACCTAGTCGTTGGCAGGGGAGGTTTTGGCGCAGTGTACAAAGGACTTCTAGAGAATGACAAAGTTGTTGCCATCAAGAAGTCCAAAACAGTTAATCCTACACAAGTTGAGCAATTCATCAATGAGGTTATTGTTTTGTCCCAAATTAACCACAGAAATGTGGTGAAGCTTTTGGGTTACTGTTTAGAAACAGAAGTCCCTCTTCTTGTCTATGAGTTTGTAAGCAATGGCACACTCTTCGATTTTATCCATAATGAAAACAAGAGAAATAATTTCAATTGGGAAAATCGTCTGAGAGTTGCAGCAGAGGCAGCCGGAGCTTTATCATATCATCACTCAGCTGCTTCCATACCAATTGTCCACGGAGATGTTAAGAGTGTCAACATTCTCTTAGACGAAGATTTCACTGCCAAAGTCTCTGACTTTGGAACTTCTAGATTCATTCCACGGGATCAAGTTGCATTGGCTACAATGGTCCAAGGAACTTTTGGTTATTTGGATCCAGAATACATGCAAACCAGCCAACTCACCGAGAAAAGCGATGTGTATAGCTTTGGCGTTGTGCTGGCAGAGCTTCTTACAGGACAGAAAGCTCTTTCATTTGAGAGGCCGGAAGGGAAGGAAAATCTTGCTATCTACTTTCTATCTTGCCTGAAGGAGAATCGCTTGTTTGAAGCTCTTCAAGTTGGAATCTTGAATGAAGATAACAAGCAGCAGATTGTGGAAGTTGCTGATGTTACTGCAAAGTGTTTGAGACTCAAAGGGGAAGAGAGACCATACATGAAGGAAGTGGCAGTGAAATTGGAAGGAATAAGGGAAATGTCACAGCAACAATGGGTCAATAATGCGGACAACAATTTTGAAGAGACCCAATCTCCAAAAAGACATGATAGTATTACCAATGATGAAGAAGTCTTATTGTCTTTATCATATGAAAGGTGA 1029 0.4091 MIPKKTVATRKISFHVLSLLKKATNNYDDNLVVGRGGFGAVYKGLLENDKVVAIKKSKTVNPTQVEQFINEVIVLSQINHRNVVKLLGYCLETEVPLLVYEFVSNGTLFDFIHNENKRNNFNWENRLRVAAEAAGALSYHHSAASIPIVHGDVKSVNILLDEDFTAKVSDFGTSRFIPRDQVALATMVQGTFGYLDPEYMQTSQLTEKSDVYSFGVVLAELLTGQKALSFERPEGKENLAIYFLSCLKENRLFEALQVGILNEDNKQQIVEVADVTAKCLRLKGEERPYMKEVAVKLEGIREMSQQQWVNNADNNFEETQSPKRHDSITNDEEVLLSLSYER 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03363 342 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Aip06g03363 342 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 9 18 319 - -
Aip06g03363 342 SMART serkin_6 27 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g03363 342 ProSiteProfiles Protein kinase domain profile. 27 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g03363 342 Pfam Protein tyrosine and serine/threonine kinase 33 296 IPR001245 GO:0004672|GO:0006468
Aip06g03363 342 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 18 319 IPR045274 GO:0007166
Aip06g03363 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Aip06g03363 342 SUPERFAMILY Protein kinase-like (PK-like) 11 297 IPR011009 -
Aip06g03363 342 Gene3D Transferase(Phosphotransferase) domain 1 103 326 - -
Aip06g03363 342 CDD STKc_IRAK 33 300 - -
Aip06g03363 342 Gene3D Phosphorylase Kinase; domain 1 2 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03363 Aip-Chr6 130402100 130403553 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03363 20 330 Receptor kinase-like Gene Family AT1G21250 56.790 2.55e-123 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Aip06g03363 PK_Tyr_Ser-Thr 4.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03363 - - ahf:112757813 633.639