Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03337 ATGGGAGAAACCAAGGACGAAGGATACGAGGAGGAGCTTCTTGACTACGAAGAGGAGGACGAGAAGGCACCTGACTCCGTTGGAACCAAAGTCAACGGTGAAGCTGCCAAGAAGGGCTATGTTGGTATCCACAGTTCAGGATTCAGAGACTTCCTTCTGAAGCCAGAGCTTCTCCGGGCTATTGTGGACTCTGGATTTGAGCATCCTTCCGAAGGCAAGTTATCACTCATCCTCATTTATATGCAACACGAATGCATACCTCAGGCAATCCTTGGAATGGATGTGATTTGTCAAGCTAAATCGGGAATGGGAAAAACTGCAGTGTTTGTTCTTTCAACTTTGCAGCAGATTGACCCTGTTGCAGGACAAGTTTCTGCACTTGTTCTGTGCCACACTAGGGAATTGGCATACCAGATCTGCCATGAGTTTCAGAGGTTCAGCACTTACTTACCTGATCTCAAGGTTGCTGTCTTCTATGGAGGTGTCAACATTAAAGTTCATAAGGATCTACTGAAAAATGAATGCCCTCATATTGTTGTTGGTACACCTGGAAGAATACTAGCACTGGCTAGGGACAAGGACCTTTCATTGAAGAATGTTAGGCATTTCATTTTAGATGAATGTGATAAGATGCTGGAATCACTGGACATGAGAAAAGACGTGCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTGATGATGTTTTCTGCAACACTTAGCAAGGAAATTCGTCCTGTCTGCAAGAAATTTATGCAAGATCCAATGGAAATTTATGTTGACGACGAAGCCAAGTTGACCCTTCATGGACTTGTGCAGCACTATATTAAATTGAAAGAGGAGGAAAAGAACAGGAAGCTGAATGACCTTCTTGATGCATTGGACTTTAATCAAGTTGTGATCTTTGTTAAAAGTGTTAGCAGAGCAGCTGAGCTTGACAAACTACTTGTGGAGTGCAACTTTCCATCAATATGTATTCATTCTGGAATGTCCCAGGAAGAAAGGTTAAAGCGATACAAAGGTTTTAAGGAGGGCCACACTAGGATTCTTGTGGCTACAGATTTGGTTGGTAGGGGAATTGACATCGAACGCGTGAATATAGTTATAAACTATGACATGCCCGATTCTGCAGACACTTACTTGCACAGAGTAGGTCGAGCTGGAAGGTTTGGCACGAAAGGCCTAGCAATTACATTTGTTTCATGTGCTAATGACGTTGATGTCCTTAACAATGTTCAGTCCAGGTTTGAGGTTGATATTAAGCAACTTCCTGAGCAGATTGATACCTCTACCTACATGCCATCTTGA 1311 0.4287 MGETKDEGYEEELLDYEEEDEKAPDSVGTKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKLSLILIYMQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFQRFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCANDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03337 436 SMART ultradead3 74 275 IPR014001 -
Aip06g03337 436 Pfam DEAD/DEAH box helicase 81 245 IPR011545 GO:0003676|GO:0005524
Aip06g03337 436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 405 IPR027417 -
Aip06g03337 436 Pfam Helicase conserved C-terminal domain 285 392 IPR001650 -
Aip06g03337 436 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 431 - -
Aip06g03337 436 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 271 432 IPR001650 -
Aip06g03337 436 Gene3D - 42 267 IPR027417 -
Aip06g03337 436 SMART helicmild6 311 392 IPR001650 -
Aip06g03337 436 CDD DEADc_DDX39 45 261 - -
Aip06g03337 436 CDD SF2_C_DEAD 272 401 - -
Aip06g03337 436 MobiDBLite consensus disorder prediction 1 22 - -
Aip06g03337 436 Gene3D - 268 435 IPR027417 -
Aip06g03337 436 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 86 259 IPR014001 -
Aip06g03337 436 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 27 431 - -
Aip06g03337 436 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03337 Aip-Chr6 130030572 130036260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03337 1 436 Eukaryotic Initiation Factors Gene Family AT5G11200 82.008 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03337 K12812 - gmx:100796232 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03337 06 130030572 130036260 Aip06g03337 06 130030572 130036260 ECH