Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03330 ATGATCATGGAATCTCCAGAACCTTCGAAGAACAATGCAACTTCTTCGGCCTCCACAATCAATGCCGTCGCCATCAATGACTCCCCTCAAGTTCAAGAATCACCCTTTTTCAGGTTTGTAAACAACTTATCTCCTATAAAGCAACCTGCCAAGGCTTCTCATGTGGCACAAGGCTTCGTTGGACTCAATTCTCCGCCTCTTGTATTCACATCACCGCGTATTAGTTGTCACCGTGAAACACACTTATTGGAAAGACCTTCATGTGCTCAGTCATCAAGTCGATCAGAATCTCAAAGTGACAATAGAGGCAAGTTAATTGAAGCTCCTGGTGATTCTGCGAAATCAACTGCTGAACTGCCACCTGCAGGGGAGTTTATAACTGAAACTGTGAAGGATTTTGATGTAAAAAATGATGCAACTACTCAACACTGCAGTCCGCCGCCATCTGTTGATAAATATCTGGTTGATCCTGTGGATATTGATCAAATGTACTCTGTCAACCCAGATGAGAAACAATCTAACGATACTGAATCATCTCCGAGTAACTTAGCTCAATCAAAGAAAAGCATATCAGAAGTTGACAGCAAAGATGATCCTTGTGATAAAGCAGATAAACCTTTGATTTTGTTAGAGAAAGTTGATAAGGCTCAAACAGGGCCAGCATATGTTGAAGGGCATGATCAAATAACAGGGGAGAAAAATGATGTTTTAATGGCTTTGCACAAGCGCATGAAGGATAATAATGACTGTACATCTCAGTTGCTTCCCGAACAGACTCTGCAGGATGTTAAAGATTGGGAAGATTGTGATGAGATGGTGTCAACCTCACATGTAGGTGCTGAGAACGTGTCACAAGATGCTTCTGAGGTTACTCTAAAGCATCATGGCCTTCGTAGACGGTGTCTACAATTTGAGGAGGCTGCATCTAATGCTCTTGGAAGTGATAAATCTTGTATGAAATCAAATGCAGCTCCAATCAAAATAAAAATGGTCAAGCTGTCTGAACCTGGCACTTCTTCCTTGTTTACTCAAAGATGTAGTGGAAACTCAACTGTGACATGTCCCAAGCCATCAGGCATTGGATTGCATTTAAATAGCATTGTAAATGCTATGCCTCCTGGTTGTGCTGCAACTACAGGTATTAGATCATCAGATTGTTTACAAGGGAAGAAATCTGCATTGATTAGTATAAATAAAGTGGAGAACATGAAGGGACGCCTAACTTCATCAAATATAGATGGGCAATCATTAATTGATAGTGGAAATGAGAGCCAAGCCAACATTTCCTCACTACCCGTAGATTCTTTCATTTCTGGGTCTCATAGCCCTACAGAACCTGTTGCTATATGTCCTGAAAGTCTCCATGATAAGAGGAAACTAAGCCCTACAGGTGATGGATATCCTGAGGAATCCAAGCAACCTAGCCCGAGCAAGAAAAAGAAGAGAGCATCAAGCAACAATGATGATAATGGCTGTAAAAGGTGCAACTGTAAAAAGAGTAAATGTTTGAAACTTTATTGTGATTGTTTTGCTGCTGGAATCTATTGCGCTGATGATTGTTCTTGCCAAAGCTGCTTGAATAGACCAGAGTATGAAAATAAAGTTATTGAAACAAGGAAACAAATTGAATCCCGTAATCCTCTTGCATTTCTTCCCAAGATTGTCCCTCAATCCACTGATCGTTCATCAAATAATATGGAGGATGCAATTCTGATGACACCTTCATCAGCTAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAATGTGTCAGAAAAAATATTGTGAATGTTATCAGGCTGGTGTCGGATGCTCTAGCGGATGCCGATGTGAGGGATGTAAGAATGTTTATGGCACAAAAGAAGATTATGTTGCAAGGGATCATGTTTTCAATAAAGAAAGGATGGGCAGCAGGATTGAAAATGAACCAGATGGTGCTTTTCTCAACAAACTGGAAATGGTGGCAAGCAAGTCAGATTTGTATGACCTGCCCCATGTCTCACCTGTAACACCATCATTGCAATGCTCTGACCAAGGAAAGGAGGCTGCAAAATTCGGACTTCATTCTGGACAGCATCTACCCTCCTCTGAAACTAATGTTGATATGCTTCCCTCAAGTGCAAATTATAACAAGTCTCTGGAGAACTCGCAGAGTGTTCTTGCAAACCTGGAAACAGATGAGATGTTGGAAACTGCTTCCTATGATTGGCAAGTGGATTGCAGCGATGTAATGGATCAATCATCACCATGTGATTTGGTTGCTAACATACTTCAGGATACTCCCTTGTCAAATCCTGAATCAATGTCAAGTGCTTCACTGTTCACATCTAGTACAAAGGAGTGCGGAAACATTCCTCTATCCCAATCACAAGGACGCATTCGCCTAATATCCGGGAGCTCTCTTCGTTGGCGTGGTTCACCAAATACCCCAAGGGTTAGATTAGGTGTAAAACACCTTCAATCTCTTGATTCTGAAAGCAGACTCTTCGACATAATGGAAGATGAAACACCAGATGTATTGAAGGAAGGTTTAACACCCACCAAGTCTGTGAAAGCAAATTCCCCAAACCAGAAGCGAGTTTCTCCTCCCCATAGTCGTCTACGCGGACTTGGTTCAAGCTCCTCTGGAGGCTTCAGAACTGGCAGGAAATTTATACTGAAATCTGTTCCTTCCTTTCCCCCATTGACACCTTGTGTTGAATCCAAAGATAATAGCAGTGAAGATTTAGGTAACAATGCCAAGTAA 2745 0.4164 MIMESPEPSKNNATSSASTINAVAINDSPQVQESPFFRFVNNLSPIKQPAKASHVAQGFVGLNSPPLVFTSPRISCHRETHLLERPSCAQSSSRSESQSDNRGKLIEAPGDSAKSTAELPPAGEFITETVKDFDVKNDATTQHCSPPPSVDKYLVDPVDIDQMYSVNPDEKQSNDTESSPSNLAQSKKSISEVDSKDDPCDKADKPLILLEKVDKAQTGPAYVEGHDQITGEKNDVLMALHKRMKDNNDCTSQLLPEQTLQDVKDWEDCDEMVSTSHVGAENVSQDASEVTLKHHGLRRRCLQFEEAASNALGSDKSCMKSNAAPIKIKMVKLSEPGTSSLFTQRCSGNSTVTCPKPSGIGLHLNSIVNAMPPGCAATTGIRSSDCLQGKKSALISINKVENMKGRLTSSNIDGQSLIDSGNESQANISSLPVDSFISGSHSPTEPVAICPESLHDKRKLSPTGDGYPEESKQPSPSKKKKRASSNNDDNGCKRCNCKKSKCLKLYCDCFAAGIYCADDCSCQSCLNRPEYENKVIETRKQIESRNPLAFLPKIVPQSTDRSSNNMEDAILMTPSSARHKRGCNCKRSMCQKKYCECYQAGVGCSSGCRCEGCKNVYGTKEDYVARDHVFNKERMGSRIENEPDGAFLNKLEMVASKSDLYDLPHVSPVTPSLQCSDQGKEAAKFGLHSGQHLPSSETNVDMLPSSANYNKSLENSQSVLANLETDEMLETASYDWQVDCSDVMDQSSPCDLVANILQDTPLSNPESMSSASLFTSSTKECGNIPLSQSQGRIRLISGSSLRWRGSPNTPRVRLGVKHLQSLDSESRLFDIMEDETPDVLKEGLTPTKSVKANSPNQKRVSPPHSRLRGLGSSSSGGFRTGRKFILKSVPSFPPLTPCVESKDNSSEDLGNNAK 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03330 914 Coils Coil 912 914 - -
Aip06g03330 914 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 3 907 - -
Aip06g03330 914 MobiDBLite consensus disorder prediction 85 99 - -
Aip06g03330 914 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 3 907 IPR044522 GO:0003700
Aip06g03330 914 MobiDBLite consensus disorder prediction 165 202 - -
Aip06g03330 914 MobiDBLite consensus disorder prediction 472 490 - -
Aip06g03330 914 MobiDBLite consensus disorder prediction 166 189 - -
Aip06g03330 914 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 581 615 IPR005172 -
Aip06g03330 914 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 493 528 IPR005172 -
Aip06g03330 914 ProSiteProfiles CRC domain profile. 491 618 IPR005172 -
Aip06g03330 914 MobiDBLite consensus disorder prediction 83 122 - -
Aip06g03330 914 MobiDBLite consensus disorder prediction 843 914 - -
Aip06g03330 914 MobiDBLite consensus disorder prediction 898 914 - -
Aip06g03330 914 MobiDBLite consensus disorder prediction 458 490 - -
Aip06g03330 914 SMART CXC_2 490 531 IPR033467 -
Aip06g03330 914 SMART CXC_2 578 619 IPR033467 -
Aip06g03330 914 MobiDBLite consensus disorder prediction 847 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03330 Aip-Chr6 129955278 129961153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03330 834 897 CPP Transcription Factor Family AT4G14770 50.000 6.22e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Aip06g03330 TCR 8.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03330 K21776 - gmx:547664 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03330 06 129955278 129961153 Aip06g03330 06 129955278 129961153 ECH
Aip06g03330 06 129955278 129961153 Aip10g02247 10 100911077 100915846 PCT