Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03308 ATGGAGATTATCAACAACAACAATAACAATGGAATTTCAAGAGATGGAATCCTAAGGAGTAATAGCTCCAACACATGGAGGAACAATAGCATGGATGCTTTCTCTTCGTCCGAACGGCGCGAAGACGACGAAGAAGCTCTAAAATGGGCCGCAATTGAGAGGCTTCCGACGTATTTGCGCATTCGGAGAAGCATGATAAACAATTCGGAGGTTGACATCAAGCACATGGGATTAACGGAGAGGAAGATTCTTCTTGAGAGGCTTGTCAAGATTGCTGAAGAAGATAATGAGAAGTTCTTGTTGAAACTAAGAGAAAGGATGGAAAGAGTTGGACTTGATATTCCAACAATTGAAGTGAGGTTCGAGCACATAAATGTGGAAGCACAAGTTTATGTTGGAAGAAGAGCATTGCCTACACTATTCAACTTCTATGTGAATGTTTTAGAGGGGTTCTTCAATTATCTCCACATCATTCCAAGTCCAAAGAAGCCTTTACACATCCTTCAAAATGTTAGTGGAATCATAAGGCCCAGAAGAATGACTCTGTTGTTGGGACCCCCAAGCTCAGGGAAGACCACATTGCTATTAGCCTTAGCTGGAAAACTTGGCAAAGATTTAAAAAAATCAGGGAGAGTAACATACAATGGGCATGGGGTAGAAGAGTTTGTGGCACAGAGAAGTTCAGCGTATATTGGGCAACATGATAATCACATTGGTGAAATGACTGTTAGAGAAACCCTTGCTTTCTCTGCTAGATGCCAAGGGGTTGGACACAACTATGAGATGCTGAGTGAACTTTTGAGAAGGGAGAAGGAAGCCAAGATTAAACCAGACACTGATGTTGATGCTTATATGAAGGCAGCAGCACTAGAAGGACAACAAACTAGTGTGGTCACTGACTACATTCTTAAGATCTTAGGGCTTGAAGTTTGTGCTGACATTATGGTAGGAGATGGAATGATAAGAGGAATTTCAGGAGGTCAGAAAAAGAGAGTCACTACAGGCGAAATGCTTGTTGGACCTATAAAAGTGTTGTTCATGGATGAAATATCAACTGGATTGGATAGTTCGACAACTTTTCAGATAATGAATTCGATTCGGGAATCGATTCATATTCTGAACGGAACAGCACTTGTGTCTTTGTTACAGCCAGCACCAGAAACTTATGAATTGTTTGATGATATAATACTTCTAACGGATGGACAAATAGTGTATCAAGGGCCAAGACAAAATGTGCTTGAGTTCTTTGAATCAATGGGATTCAAGTGTCCTCAAAGAAAAGGAGTTGCTGATTTCTTACAAGAGGTGACATCAAGAAAAGATCAATGGCAATATTGGGCACTCAAGGATGAACCATACAACTTTGTAACTGTCAAGGATTTTGCTGAAGGCTTCCAATTATTCCACATTGGTCAAAAACTTGGAGATGAGTTGGCCAATCCTTTTGACAAGTCAAAGAGCCATCCAAGTGCATTGACCACAAAAAAGTATGGTGTAAACAAGAAAGAGCTTCTCAAGGCTTGTGCTAGCAGAGAATTCTTGCTTATGAAACGAAATTCCTTTGTCTACATCTTCAAAGCCATACAATTAGTTTATTTAGCAGTCATGACAACAACACTATTTCTAAGACCAAAGATGCACCGAGATTCTGTGTTGGATGGAGGAACTTACTTGGGTGCACTTTTCTTCACAATCACAGTGGCAATGTTCAATGGAATTGCAGAACTAAACATGACCATAATGAAACTCCCTGTGTTCTACAAGCAAAGGGACCTTCTCTTCTACCCTGCATGGGCCTATTCTATTCCTCCATGGATTCTCAAGATTCCAATTACACTTGTTGAAGTTTTCCTTTGGGAAGCAATTTGTTACTATTCTATTGGTTTTGATCCAAATTTTGGAAGGCAACAGTTCTTGGTAATCTTCTGCATCAATCAGATGGCGTCTTCGCTGTTTCGGTTGATGGCAGGACTTGGAAGGGATGTTATAGTTGCTAACACTGTTGGTTCATTTGCATTGCTCATAGTTTTGGTCTTGGGAGGATTTGTCATTTCAAGAGAGGATGTGCACAAATGGTTCTTATGGGGCTACTGGTCCTCACCACTGATGTATGCCCAGAATGCCATTGCTGTTAATGAGTTTCTTGGCCATAGTTGGAGAAAGGTTCTTCCTGGTACCAATGAAACTCTGGGAGTATTGGTACTCAAATCTCGTGGACTATTCACAGAATCGTATTGGTTTTGGTTAGGAATAGGAGCTTTGATTGGTTATGTTTTCCTCTTCAATTTTCTCTTCACCTTGGCTTTGCAATACCTCAGTCCATTGAGAAAGAATCAAGCAGGATTGTCCCAAGAGAAATTGCTGGAAAGGAATGCTTCCACTCGCGAAGAGGCCGTTCAATTATCGACACGAAAAAGCACCACAGGTTATTTCTCTTTAAATGCACTCACTTTGCATCTTATATCAGGCCGAGTCACCCTTGTGAGTCGGCCTGATATACGATGTAAAATGAGTCCTTCAAATATTTTTTTTCTTTTATGTAAGTTTGGTATTCAAAGTTCAAAGCATAACATAGAAATGAAAAATCAAGGGGTTTTCGAAGATCGTCTAGAACTTTTGAAGGGTGTTAGCGGCGCTTTTAGGCCGGGAGTACTAACAGCTTTGATGGGGGTAAGTGGAGCCGGCAAGACTACTCTGATGGATGTTTTGGCCGGAAGGAAAACCGGTGGATATATAGAAGGAAGCATCACAATCTCTGGTTATCCTAAGAATCAAGAAACGTTTGCTCGAATATCCGGATACTGCGAACAATTTGATATCCACTCACCTTATGTGACAGTCTATGAATCTTTGATGTATTCAGCATGGCTTCGTTTACCCCATGAAGTTGATCCTTCAACAAGAAAGATGTTCATTGAGGAAGTTATGGAGCTTGTGGAGCTTAACTCATTGAGAGAAGCACTTGTTGGATTGCCGGGGGAGACAGGACTTTCGACCGAGCAAAGAAAACGGCTAACAATTGCAGTTGAGCTTGTAGCCAACCCATCAATAATATTCATGGATGAACCAACCTCTGGCCTTGATGCCAGAGCAGCTGCAATTGTAATGAGAACTGTGAGGAACACGGTCGACACAGGCCGGACCGTGGTTTGCACCATTCACCAGCCTAGTATTGACATATTTGATGCCTTTGATGAGCTGTTACTCTTAAAATTGGGAGGGGAACAAATATATGCCGGCCCATTAGGCCGCCATTGCTCACAATTGATTCAATACTTTGAGGGTATTGAAGGAGTTCCTAAGATCAAAGATGGTTATAACCCTGCAACATGGATGTTGGAAGTTACATCAGCAGTAACAGAAGCAAATCTTAATGTCAACTTCACTGATGTGTACAGAAGCTCAGAACTACACCGGAGAAATAAACAACTGATCCAAGAACTTAGTATACCTGTACAAGGTTCACAAGATCTATACTTTGATACTCAGTATTCACAGAACTTTCTAACACAATGCAAAGCATGCCTATGGAAACAACATTTATCATATTGGAGGAACACATCTTATACAGCAGTTAGACTGCTATTCACAGCAATTATAGCTCTAGTATTTGGGGTCATCTTTTGGGACATTGGCTTTAAAAGGAGAAAGGAGCAAGATCTTTTTAATGCAATGGGATCAATGTATGCTGCTGTTACCTTCATTGGGGTGCAAAATGGTGCCTCAGTGCAACCTATGATAGCAGTTGAGAGAACAGTCTTCTACAGAGAAAGAGCTGCTGGAATGTATTCAGCTTTGCCATATGCTCTTGCACAGGTTATTATTGAACTTCCGCATATCTTGGTTGAGGCTCTTGTTTATGGGGTTATAGTGTATGCAATGATGGGGTTTGATTGGACAGCATCAAAGTTCTTGTGGTATCTATTCTTCATGTACTTCACATTCTTATATTACACCTTTTATGGGATGATGACAATGGCGATAAGTCCCAACCCTCATGTTGCTGGTATATTGTCCGGTGGATTCTATGCAATATGGAGCCTTTTCTCAGGCTTCATCATTCCCTTATCGAGAATACCCATATGGTGGAAGTGGTGCTATTGGATATGCCCTGTTGCATGGACACTGAATGGATTGGTGACTTCACAATATGGAGACAACATGGACAAACTTGAAAATGGTCAAAGGATTAAGGATTTTGTGGAGAGTTACTTTGGATTTCACCATGACTTTCTTGGAGTTGTTGCAATTGTGGTGGCTGCTTTCTCACTCTTATTTGCACTCATTTTTGCATTTGGCATCAAAGTATTCAACTTCCAAAAAAGATGA 4329 0.4091 MEIINNNNNNGISRDGILRSNSSNTWRNNSMDAFSSSERREDDEEALKWAAIERLPTYLRIRRSMINNSEVDIKHMGLTERKILLERLVKIAEEDNEKFLLKLRERMERVGLDIPTIEVRFEHINVEAQVYVGRRALPTLFNFYVNVLEGFFNYLHIIPSPKKPLHILQNVSGIIRPRRMTLLLGPPSSGKTTLLLALAGKLGKDLKKSGRVTYNGHGVEEFVAQRSSAYIGQHDNHIGEMTVRETLAFSARCQGVGHNYEMLSELLRREKEAKIKPDTDVDAYMKAAALEGQQTSVVTDYILKILGLEVCADIMVGDGMIRGISGGQKKRVTTGEMLVGPIKVLFMDEISTGLDSSTTFQIMNSIRESIHILNGTALVSLLQPAPETYELFDDIILLTDGQIVYQGPRQNVLEFFESMGFKCPQRKGVADFLQEVTSRKDQWQYWALKDEPYNFVTVKDFAEGFQLFHIGQKLGDELANPFDKSKSHPSALTTKKYGVNKKELLKACASREFLLMKRNSFVYIFKAIQLVYLAVMTTTLFLRPKMHRDSVLDGGTYLGALFFTITVAMFNGIAELNMTIMKLPVFYKQRDLLFYPAWAYSIPPWILKIPITLVEVFLWEAICYYSIGFDPNFGRQQFLVIFCINQMASSLFRLMAGLGRDVIVANTVGSFALLIVLVLGGFVISREDVHKWFLWGYWSSPLMYAQNAIAVNEFLGHSWRKVLPGTNETLGVLVLKSRGLFTESYWFWLGIGALIGYVFLFNFLFTLALQYLSPLRKNQAGLSQEKLLERNASTREEAVQLSTRKSTTGYFSLNALTLHLISGRVTLVSRPDIRCKMSPSNIFFLLCKFGIQSSKHNIEMKNQGVFEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSITISGYPKNQETFARISGYCEQFDIHSPYVTVYESLMYSAWLRLPHEVDPSTRKMFIEEVMELVELNSLREALVGLPGETGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKLGGEQIYAGPLGRHCSQLIQYFEGIEGVPKIKDGYNPATWMLEVTSAVTEANLNVNFTDVYRSSELHRRNKQLIQELSIPVQGSQDLYFDTQYSQNFLTQCKACLWKQHLSYWRNTSYTAVRLLFTAIIALVFGVIFWDIGFKRRKEQDLFNAMGSMYAAVTFIGVQNGASVQPMIAVERTVFYRERAAGMYSALPYALAQVIIELPHILVEALVYGVIVYAMMGFDWTASKFLWYLFFMYFTFLYYTFYGMMTMAISPNPHVAGILSGGFYAIWSLFSGFIIPLSRIPIWWKWCYWICPVAWTLNGLVTSQYGDNMDKLENGQRIKDFVESYFGFHHDFLGVVAIVVAAFSLLFALIFAFGIKVFNFQKR 1442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03308 1442 PANTHER ATP-BINDING CASSETTE TRANSPORTER 14 1442 - -
Aip06g03308 1442 Pfam ABC-2 type transporter 383 434 IPR043926 GO:0140359
Aip06g03308 1442 Pfam ABC-2 type transporter 504 714 IPR013525 GO:0016020|GO:0140359
Aip06g03308 1442 Pfam ABC-2 type transporter 1170 1383 IPR013525 GO:0016020|GO:0140359
Aip06g03308 1442 SMART AAA_5 882 1074 IPR003593 -
Aip06g03308 1442 SMART AAA_5 177 402 IPR003593 -
Aip06g03308 1442 Pfam ABC-transporter N-terminal 73 143 IPR029481 -
Aip06g03308 1442 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 152 425 IPR003439 GO:0005524
Aip06g03308 1442 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 858 1097 IPR003439 GO:0005524
Aip06g03308 1442 Gene3D - 153 454 IPR027417 -
Aip06g03308 1442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 425 IPR027417 -
Aip06g03308 1442 Pfam ABC transporter 873 1025 IPR003439 GO:0005524
Aip06g03308 1442 PANTHER ABC-2 AND PLANT PDR ABC-TYPE TRANSPORTER FAMILY PROTEIN 14 1442 - -
Aip06g03308 1442 Gene3D - 856 1092 IPR027417 -
Aip06g03308 1442 CDD ABCG_PDR_domain2 865 1080 IPR034003 -
Aip06g03308 1442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 857 1081 IPR027417 -
Aip06g03308 1442 Pfam ABC transporter 168 350 IPR003439 GO:0005524
Aip06g03308 1442 Pfam Plant PDR ABC transporter associated 719 780 IPR013581 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03308 Aip-Chr6 129587995 129596119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03308 870 1057 Calmodulin-binding Proteins AT2G36910 26.108 3.32e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03308 K08711 - gmx:100810505 2353.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03308 06 129587995 129596119 Aip06g03308 06 129587995 129596119 ECH
Aip06g03308 06 129587995 129596119 Aip08g03021 08 119349617 119359831 PCT