Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03305 ATGTCTCAAACTAACTGGGAGGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTTGTGAAGAGGGACTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCGGACCCAGTTGCTATCGATGCTCCCGGAGGATTTCTATTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCCGCCTCGTATATTGAGACACAATTAATTAAGGCTAGGGAGCAACAGCAGCAGCAACAGCAGCCGCAGCCACAACCCCAGCAGTCACAACATCAACATCAACAGCAGCAGCAGCAGCAACAACAACAACAACAACAGCAGCAGCAGCCGCAGCAACAGCAGCAACAACAGCAGCCACAGCCGCAGCAACAGCAGCAACCACCCCAACAACAACAGGGTAGGGATAGGGCTCATCTCTTGAATGGTGGTACCAATGGGCTAGTTGGAAACCCTGGCACTGCTAATGCAATGGCAACAAAGATGATCGAGGACAGGTTAAAACTGCCCCTTCAGAGGGATTCTTTGGATGAAGCAGCAATGAAGCAAAGATTCGGAGACCAACTCATGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTCCTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGCGATGTCTCCACAAGTTCAAGGTCGTAGTCAGCAATTACCAGGGTCTACTCCGGACATTAAGAGTGAGATTAATCCTGTTTTAAATCCCAGAGCTGCGGGGCCTGAAGGATCACTAATAGGAATGCCTGGATCAAATCAAGGCAGCAACAATTTGACTTTGAAGGGGTGGCCACTCACAGGGTTGGAGCAATTACGGTCTGGTCTACTTCAGCAGCAAAAACCTTTCATGCAAGCCCCACAGCCTTTTCATCAGCTTCCAATGTTGACACCCCAGCATCAGCAACATCTTATGTTACAAGCACAACAAAATCTGGCATCACCATCTGCTAGTGATGATAGTAGAAGACTCAGAATGCTGATGAATAATAGGAACATGGGGTTAAGTAAGGATGGTCTTTCAAATCCGGTGGGGGATGTACCAAATGTTGGATCACCACTTCCAGGTGGTGGTCCCCCGTTTCCTCGTGGAGATACAGATATGTTAATGAAGTTGAGACTGGCTCAGTTACATCAGCAGCATCAAAATGCCAATCCACAGCAGCAGCAGCAGCTTCAACAGCATGCTCTTTCAAATCAGCAATCCCAGAGTTCAAATCATAGCATGCATCAACAAGACAGAGTAGCAGGAGCTGGCAGTGTCACTGCGGATGGAAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCAAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCTGGACCTGCCAATAGCTCAGGAACAGCAAATACAGCAGGCCCATCTCCAAGTTCAGCGCCATCAACTCCCTCCACTCATACACCTGGTGATGTGATGTCAATGCCTGCATTACCTCATAGTAGTAGTTCAACAAAGCCTCTAATGATGTTTGGTACCGATGGCACCGGAACTCTTACATCACCCTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGACGTGGATCGTTTTGTGGAGGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACAGATGCTAGAGATGCAGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAACTCAGTACGGGCAAGCACAAGCAAGGTCGTCTGTTGCCATTTCTCATCTGATGGGAAATTGCTTGCAAGTGGTGGACATGACAAGAAGGCTGTTTTATGGTACACAGATTCTCTGAAGCAGAAAACTACCCTTGAAGAGCATTCATCGTTAATCACTGATGTCCGGTTTAGCCCAAGCATGCCTCGCCTTGCAACATCTTCGTTTGACAAAACTGTCAGAGTTTGGGATGTTGACAATCCGGGGTATTCTCTTCGCACCTTTACTGGACATTCAACATCAGTTATGTCTCTAGATTTTCACCCGAATAAGGATGACCTTATCTGCTCTTGTGATGGTGACGGTGAGATACGATATTGGAGCATAAACAATGGCAGTTGTGCTAGAGTTGCAAAGGGTGGGACTGTGCAGATGAGATTTCAACCTCGACTCGGGAGGTACCTTGCTGCGGCTGCAGAGAATGTCGTATCTATACTTGATGTGGAGACACAAGCATGCCCATATTCGTTAAAGGGACACACAAAGCCGATACATTCCGTGTGTTGGGACCCATCTGGGGAGTTCCTTGCATCTGTCAGTGAGGACTCTGTAAGGGTTTGGACTCTTGGAACAGGAACTGAGGGCGAATGTGTTCACGAGCTTAGCTGTAACGGCAACAAGTTCCACTCGTGTGTTTTCCACCCAACGTATTCTTCGCTGCTCGTCATTGGTTGTTATCAGTCGTTGGAGCTGTGGAACATGTCAGAGAACAAGACAATGACTCTGTCTGCTCATGAAGGTCTGGTCGCCGCGTTGGCAGTTTCAACTGTAAATGGTTTGGTTGCTTCAGCGAGTCATGACAAGTATGTCAAGCTCTGGAAATAA 2652 0.4706 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQPQPQPQQSQHQHQQQQQQQQQQQQQQQQPQQQQQQQQPQPQQQQQPPQQQQGRDRAHLLNGGTNGLVGNPGTANAMATKMIEDRLKLPLQRDSLDEAAMKQRFGDQLMDPNHASILKSSAAPGQPSGQVLHGAAGAMSPQVQGRSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLPMLTPQHQQHLMLQAQQNLASPSASDDSRRLRMLMNNRNMGLSKDGLSNPVGDVPNVGSPLPGGGPPFPRGDTDMLMKLRLAQLHQQHQNANPQQQQQLQQHALSNQQSQSSNHSMHQQDRVAGAGSVTADGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSSSSTKPLMMFGTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSHDDTDARDAVGRCMDVSKGFTFSEVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWYTDSLKQKTTLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVAKGGTVQMRFQPRLGRYLAAAAENVVSILDVETQACPYSLKGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGTGTEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHEGLVAALAVSTVNGLVASASHDKYVKLWK 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03305 883 Pfam WD domain, G-beta repeat 638 673 IPR001680 GO:0005515
Aip06g03305 883 Pfam WD domain, G-beta repeat 680 717 IPR001680 GO:0005515
Aip06g03305 883 Pfam WD domain, G-beta repeat 846 883 IPR001680 GO:0005515
Aip06g03305 883 Pfam WD domain, G-beta repeat 599 630 IPR001680 GO:0005515
Aip06g03305 883 Pfam WD domain, G-beta repeat 762 796 IPR001680 GO:0005515
Aip06g03305 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 684 726 IPR001680 GO:0005515
Aip06g03305 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 641 676 - -
Aip06g03305 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 684 722 - -
Aip06g03305 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 766 798 IPR001680 GO:0005515
Aip06g03305 883 MobiDBLite consensus disorder prediction 402 521 - -
Aip06g03305 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 851 883 IPR001680 GO:0005515
Aip06g03305 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 641 676 IPR001680 GO:0005515
Aip06g03305 883 MobiDBLite consensus disorder prediction 89 167 - -
Aip06g03305 883 SMART Lish 8 40 IPR006594 GO:0005515
Aip06g03305 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 851 883 - -
Aip06g03305 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 640 IPR001680 GO:0005515
Aip06g03305 883 SMART WD40_4 634 673 IPR001680 GO:0005515
Aip06g03305 883 SMART WD40_4 844 883 IPR001680 GO:0005515
Aip06g03305 883 SMART WD40_4 677 717 IPR001680 GO:0005515
Aip06g03305 883 SMART WD40_4 592 631 IPR001680 GO:0005515
Aip06g03305 883 SMART WD40_4 759 797 IPR001680 GO:0005515
Aip06g03305 883 SMART WD40_4 803 842 IPR001680 GO:0005515
Aip06g03305 883 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 883 IPR044716 GO:0003714
Aip06g03305 883 Pfam LisH 10 36 IPR006594 GO:0005515
Aip06g03305 883 MobiDBLite consensus disorder prediction 445 505 - -
Aip06g03305 883 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 883 - -
Aip06g03305 883 CDD WD40 595 883 - -
Aip06g03305 883 MobiDBLite consensus disorder prediction 402 438 - -
Aip06g03305 883 Gene3D - 730 883 IPR015943 GO:0005515
Aip06g03305 883 Gene3D - 575 729 IPR015943 GO:0005515
Aip06g03305 883 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Aip06g03305 883 ProSitePatterns Trp-Asp (WD) repeats signature. 660 674 IPR019775 -
Aip06g03305 883 SUPERFAMILY WD40 repeat-like 593 883 IPR036322 GO:0005515
Aip06g03305 883 MobiDBLite consensus disorder prediction 356 389 - -
Aip06g03305 883 MobiDBLite consensus disorder prediction 89 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03305 Aip-Chr6 129455202 129465029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03305 644 843 Miscellaneous Gene Families AT5G08390 26.570 3.88e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Aip06g03305 WD40 0.032 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03305 - - aip:107605121 1543.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03305 06 129455202 129465029 Aip06g03305 06 129455202 129465029 ECH
Aip06g03305 06 129455202 129465029 Aip08g03000 08 118938851 118948628 PCT