Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03297 ATGCATGTTCTCGCACCAGAAGTGCATATTGAAGGTCCACCTGACACATCTCCGTTGTTGATGGAGCGGCTGGGTAGCTTGAACAGCAATCAGCATATGATCGTGCAGCCGGAGAGGTTGAATGACAATCAGCATATCATAGACATTAACATAGCTGGAAACGGTGATGCTTCCACTTCAGGCTCAGCTCATGATAGACATTCTAATGGTGTGGATACATCACAGCATGTAGAGAGAGCGGGCAGTGTGAGAGTACCTGTTTCCCAGCCTTCGGTTTTATCCAACAATGGATCCAATGGATCAAACTCCAGGAATTCTTCGTTCATCAGACGTGGAGATTCACGCCGGAGTAGGAGTCCAGTGCATTCGGGGTTGTGGATATCTGTAGAACTAGCACTCTTAGTAAGTCAAATCGTTGCATCAATTGTTGTATTGTCTTTGTCAAGGCACGAGCATCCACGTTCCCCATTGTTTGCGTGGATTGTGGGTTATGCAAGTGGATGTCTTGCTACCCTACCTCTGCTTTATTGGCGGTATTATCATCATAACCAAAGTCGAGATCAAGATTCACCCCAAACCCGTCAAACATCTCCTCGGGTTAATGATCCTTCGGGGACATTTCATTCCAGTTCCAGAAGTAATGGAGGAGCAGATGGTCAAGCTGCTGCTTCACTGTCCAGAAGCAATCAAGCTTCACCATTGACAAACAGAAGAATGAAGACACTAGTGGAATACTTCAAAATATCTTTAGATTGCTTTTTTGCTATATGGTTTGTTGTTGGAAATGTATGGATCTTTGGAGGACGTTCGTCTGCTGATGAAGCTCCTAACTTGTATAGGTTATGTATAGTGTTTCTCGCCTTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCTTGTATTATCTCCATCCTTGGCGTTAGAGAGGATATGTCACAAAACAGAGGGGCAACTTCTGAATCCATAAATGCCCTGCCAACTTACAAGTTCAAGATGAAGAAAAATAAAAGAAGTGGCGACAGTAACTCAGCTGTTGTTGATGGGGGAGTTGTAGCTGCAGGAACTGAAAAGGAGCGAGTGATATCTGGAGATGATGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAATGATGAGCTGCGAGAATTGCCTTGTTCTCATCTTTTTCACAAAGACTGTGTAGACAAGTGGTTAAAGATAAATGCATTGTGCCCTCTTTGCAAGAGTGAGGTTGGTGAGAACTTAACCGGATCGGGCGCTGCAGAAGGTGCCAGCCAATAG 1311 0.4447 MHVLAPEVHIEGPPDTSPLLMERLGSLNSNQHMIVQPERLNDNQHIIDINIAGNGDASTSGSAHDRHSNGVDTSQHVERAGSVRVPVSQPSVLSNNGSNGSNSRNSSFIRRGDSRRSRSPVHSGLWISVELALLVSQIVASIVVLSLSRHEHPRSPLFAWIVGYASGCLATLPLLYWRYYHHNQSRDQDSPQTRQTSPRVNDPSGTFHSSSRSNGGADGQAAASLSRSNQASPLTNRRMKTLVEYFKISLDCFFAIWFVVGNVWIFGGRSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGATSESINALPTYKFKMKKNKRSGDSNSAVVDGGVVAAGTEKERVISGDDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGENLTGSGAAEGASQ 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03297 436 CDD RING-H2_RNF111_like 376 418 - -
Aip06g03297 436 MobiDBLite consensus disorder prediction 81 120 - -
Aip06g03297 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 358 426 IPR013083 -
Aip06g03297 436 SMART ring_2 377 417 IPR001841 -
Aip06g03297 436 Pfam Ring finger domain 377 418 IPR001841 -
Aip06g03297 436 ProSiteProfiles Zinc finger RING-type profile. 377 418 IPR001841 -
Aip06g03297 436 MobiDBLite consensus disorder prediction 185 229 - -
Aip06g03297 436 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 37 436 - -
Aip06g03297 436 SUPERFAMILY RING/U-box 369 424 - -
Aip06g03297 436 MobiDBLite consensus disorder prediction 87 108 - -
Aip06g03297 436 MobiDBLite consensus disorder prediction 189 229 - -
Aip06g03297 436 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 37 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03297 Aip-Chr6 129361038 129364573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03297 110 428 C3H Transcription Factor Family AT1G80400 57.846 1.00e-137 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03297 - - gmx:100778728 646.351