Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03292 ATGGGAGAGGTGGCAGTAATGCGCTCTGAGCCACTGCAGTTTGAGTGCAATGATATGAAGCATCTGACAGAGGGAGACACTTATGCCACAGATTCAAATGCAGAGCTTGATCATAGGGAAGAATCAAGCCAATCAACTGATCATGAAAAGACTAATGACTTGCGTGAGAAAGGATACATGGAGTACGGATGTCAACATTACCGGAGAAGATGCTGTATCAGGGCCCCTTGTTGCAATGAGGTTTTTGATTGCCGCCACTGTCACAATGAGGCAAAAAATGATATCAGCATTGACCAGAAACTTAGACATGACATTCCGCGCCACCAAGTCAAACAGGTGATATGTTCACTTTGTGGGACAGAACAAGAGGTGCAGCAGAACTGTATCAATTGTGGTGTTTGTATGGGCAAATACTTCTGTGAAACATGCAAGCTCTTTGATGATGATGTATCGAAGCAACAATATCATTGCAATGGATGTGGAATTTGCAGAACTGGAGGACGTGAGAATTTCTTCCACTGCTACAAGTGTGGTTGTTGCTATTCAATCCTGGTAAAAGATAGTCACCCTTGCATTGAAGGAGCAATGCATCATGATTGCCCCGTTTGTTTTGAGTATTTGTTTGAATCCAGAAATGATGTCATTGTTATGCCCTGTGGACATACAATCCATAAGAGCTGCTTGAAAGAAATGAGAGAACATTACCAATATGCATGCCCTCTGTGCTCAAAGTCGGTGTGCGATATGTCGAAGGTTTGGGAGAAATTTGACTTGGAGATGGCTGCTATACCGATGCCTGAACCATATCAGAATAAAATGGTTTGGATCTTGTGCAATGATTGTTGCAAAACATCTCGAGTTCAGTTCCATTTTGTGGCTCAAAAATGCTTGAACTGCAAATCCTACAACACACGACAGACCCGAGGCGGAGACTGCTGA 939 0.4313 MGEVAVMRSEPLQFECNDMKHLTEGDTYATDSNAELDHREESSQSTDHEKTNDLREKGYMEYGCQHYRRRCCIRAPCCNEVFDCRHCHNEAKNDISIDQKLRHDIPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCETCKLFDDDVSKQQYHCNGCGICRTGGRENFFHCYKCGCCYSILVKDSHPCIEGAMHHDCPVCFEYLFESRNDVIVMPCGHTIHKSCLKEMREHYQYACPLCSKSVCDMSKVWEKFDLEMAAIPMPEPYQNKMVWILCNDCCKTSRVQFHFVAQKCLNCKSYNTRQTRGGDC 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03292 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 245 IPR013083 -
Aip06g03292 312 Gene3D - 271 311 - -
Aip06g03292 312 Pfam Zinc-ribbon 247 305 IPR039512 -
Aip06g03292 312 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Aip06g03292 312 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Aip06g03292 312 CDD RING-H2_Pirh2 199 243 - -
Aip06g03292 312 SMART ring_2 200 242 IPR001841 -
Aip06g03292 312 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 24 309 - -
Aip06g03292 312 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
Aip06g03292 312 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
Aip06g03292 312 Pfam Ring finger domain 199 242 IPR001841 -
Aip06g03292 312 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Aip06g03292 312 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 24 309 - -
Aip06g03292 312 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Aip06g03292 312 SUPERFAMILY RING/U-box 199 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03292 Aip-Chr6 129258463 129263956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03292 62 309 C2H2 Transcription Factor Family AT3G18290 39.370 6.00e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03292 K10144 - gmx:100803569 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03292 06 129258463 129263956 Aip06g03292 06 129258463 129263956 ECH
Aip06g03292 06 129258463 129263956 Aip08g02973 08 118326297 118386581 PCT