Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03260 ATGCCGGGATTAACGTGCAACGCTTGCAACAAGGAATTCAATGACGATTCAGAGCAAAAGCTTCATTACAAGTCTGAGTGGCATCGCTACAACCTCAAGCGCAAGGTGGCTGGGGTCCCTGGGGTGACAGAAGCTCTGTTTCTGGCTAGACAATCTGCTCTTGCTCAAGAGAAAGATAAGTCTAATGAAACCCCTATGCTCTATAGCTGTGGTCTTTGCGGGAAGGCGTATAAAAGTTCCAAGGCTCATGCCGAGCACCTTAAATCACGGGGTCATATTACGCGAGCATCTGAAGGAACTAGCCAATCAGATGAGAAGGCGATAGTCAAGCCACTTCCACGTCGTGTTGCAAATAGGCCTTCCCCAAGAAGTGAGGTAGACAAGTCTGACAATGAAGAAAGTGAAGATGAATGGGAGGAGGTTGATCCTGAAGATGATTTGGTTCATGATGCTGCAAAGTCTATCACTGATTTGGACATGAATGATCATGACGGCAATGCTGATATGGACGAAGATGATGATAGTTTTGAGGAGTTGGATCCATCATGTTGCTTTATGTGTGATAAAGAGCACAATACAATCGAAAGCTGCATGGTTCACATGCACAAGCACCATGGATTCTTCATTCCAGATGTTGAATATTTGAAGGATGCTAAAGGCCTTTTAACTTATCTTGGGCTTAAGGTCAAAAGGGACTATATGTGTCTCTACTGCAATGACCGCTGTTATCCTTTCAGCAGCTTGGAAGCAGTGAGGAAGCATATGGAAGCTAAAAGTCACTGTAAAGTGCATTATGGTGATGGTGATGACGAGGAAGAAGTGGAGTTAGAAGAATTCTACGATTATAGCAGCAGTTATGTGGACGAGCAAGGCAAGCAGCTGGTTGTATCCGGTGATGCAGTTAACAATGTAGAACTTGGCGGTGGTGAGCTCATAATCACCAAGAAAACTGATCGTGGAACATCAACCACAACTCTTGGTTCCCGGGAATTTCTGCGTTATTATCGTCAGAAACCTCGACCTTCATCTGCAAATAGTATGGCCATTACTGCTGCATTGGCTTCAAGGTATAGAGGCATGGGATTGGCTACGGTTCAATCAAGGGAACAAATGGTGAGGATGAAAGTACTGAAGCAAATGAACAAGTCTGGTGTGGAGAATATGCGCACCAAGATAGGAATGAAGAACAATGTGATAAGGAACTTACCAAAGAATGTTCCATATTAG 1227 0.4417 MPGLTCNACNKEFNDDSEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSALAQEKDKSNETPMLYSCGLCGKAYKSSKAHAEHLKSRGHITRASEGTSQSDEKAIVKPLPRRVANRPSPRSEVDKSDNEESEDEWEEVDPEDDLVHDAAKSITDLDMNDHDGNADMDEDDDSFEELDPSCCFMCDKEHNTIESCMVHMHKHHGFFIPDVEYLKDAKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMEAKSHCKVHYGDGDDEEEVELEEFYDYSSSYVDEQGKQLVVSGDAVNNVELGGGELIITKKTDRGTSTTTLGSREFLRYYRQKPRPSSANSMAITAALASRYRGMGLATVQSREQMVRMKVLKQMNKSGVENMRTKIGMKNNVIRNLPKNVPY 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03260 408 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Aip06g03260 408 PANTHER ZINC FINGER PROTEIN 622 1 408 IPR040025 -
Aip06g03260 408 MobiDBLite consensus disorder prediction 84 147 - -
Aip06g03260 408 MobiDBLite consensus disorder prediction 130 145 - -
Aip06g03260 408 SUPERFAMILY beta-beta-alpha zinc fingers 65 98 IPR036236 -
Aip06g03260 408 SMART c2h2final6 182 204 IPR013087 -
Aip06g03260 408 SMART c2h2final6 233 260 IPR013087 -
Aip06g03260 408 SMART c2h2final6 4 28 IPR013087 -
Aip06g03260 408 SMART c2h2final6 68 92 IPR013087 -
Aip06g03260 408 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Aip06g03260 408 PANTHER ZINC FINGER PROTEIN-RELATED 1 408 - -
Aip06g03260 408 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Aip06g03260 408 Pfam C2H2 type zinc-finger (2 copies) 184 285 IPR041661 -
Aip06g03260 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 97 IPR013087 -
Aip06g03260 408 SUPERFAMILY beta-beta-alpha zinc fingers 170 250 IPR036236 -
Aip06g03260 408 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Aip06g03260 408 Gene3D Classic Zinc Finger 4 89 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03260 1 408 C2H2 Transcription Factor Family AT4G31420 66.506 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip06g03260 zf-C2H2_2 2.7e-25 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03260 K14816 - gmx:100796317 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03260 06 128953336 128956499 Aip06g03260 06 128953336 128956499 ECH