Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03237 ATGACGCGAGCGCGGGGGTTCAGGGCTGCAACTCACGTCAGCGACGCTAACAATTGCAGGTCACGGAAGTTCGGCCGCGTGAAGAGTGACGGAGGTTCTTCCGGCGAGGGCGTTGGCACAAGAAGGCAGAGCGCGACAGTTCCGGTCGGCAGGAACGGAGGCTACACGTCGCGCAGAAACAGAGCAGTAGGATGCAGGTTGCTGCGCACACGGCGGGGCGCCGGAGAAAGGAGAGTTTTTCTGCGGAACAAACAATTGGGTTTTTTGGGGGTTTGTTTCGTACTCAAAGCTCTCGAATTTGAGCGCAGGAGGCTGCTAGGGTTTTTCGCTTCTTCTTCCCCGCATCGCTTCAGGCACTTGTTAAAGACTGAAACGATGTCCCGTGTGTATGTTGGTAATCTGGATTCAAGGGTCACAGAGAGGGACCTTGAAGATGAATTCCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCAAGGAGGCCGCCTGGTTATGCTTTTATTGACTTTGATGACAGTAGAGATGCGCGTGATGCTATTCGTGAATTGGATGGCAAGAATGGTTGGAGGGTAGAGCTTTCTCACAATTCAAGAGGTGGAGGTGGTGGCCGTGGAGGTGGCCGTGGTCGCTCTGGTGGTTCTGATTTGAAATGCTATGAGTGTGGTGAACCTGGTCATTTTGCTCGGGAGTGTCGCTTGCGTGGTGGTTCAGGAAGACGTCGTAGCCGCAGCCCACCCCGATTCCGTAGGAGCCCAAGTTATGGTCGGAGAAGTTACAGTCCCCGTGGACGGTCCCCTAGGCGCCGCAGTTTGTCACCTCGTGGACGGAGCTACAGCAGGTCACCTCCTTACCGTGGACGTGAGGAGTTACCATATGCCAATGGAAATGGCATTAGGGAACGTCGCCGAAGCAGAAGTTGA 921 0.5461 MTRARGFRAATHVSDANNCRSRKFGRVKSDGGSSGEGVGTRRQSATVPVGRNGGYTSRRNRAVGCRLLRTRRGAGERRVFLRNKQLGFLGVCFVLKALEFERRRLLGFFASSSPHRFRHLLKTETMSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDSRDARDAIRELDGKNGWRVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREELPYANGNGIRERRRSRS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03237 306 Gene3D - 121 198 IPR012677 -
Aip06g03237 306 MobiDBLite consensus disorder prediction 191 213 - -
Aip06g03237 306 SUPERFAMILY Retrovirus zinc finger-like domains 210 233 IPR036875 GO:0003676|GO:0008270
Aip06g03237 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 186 IPR000504 GO:0003723
Aip06g03237 306 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 127 298 - -
Aip06g03237 306 CDD RRM_SRSF3_like 128 196 - -
Aip06g03237 306 Gene3D - 212 268 - -
Aip06g03237 306 MobiDBLite consensus disorder prediction 21 53 - -
Aip06g03237 306 SUPERFAMILY RNA-binding domain, RBD 124 212 IPR035979 GO:0003676
Aip06g03237 306 ProSiteProfiles Zinc finger CCHC-type profile. 217 232 IPR001878 GO:0003676|GO:0008270
Aip06g03237 306 MobiDBLite consensus disorder prediction 36 53 - -
Aip06g03237 306 Pfam Zinc knuckle 217 232 IPR001878 GO:0003676|GO:0008270
Aip06g03237 306 MobiDBLite consensus disorder prediction 230 306 - -
Aip06g03237 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 198 IPR000504 GO:0003723
Aip06g03237 306 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 127 298 - -
Aip06g03237 306 SMART rrm1_1 128 194 IPR000504 GO:0003723
Aip06g03237 306 SMART c2hcfinal6 217 233 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03237 Aip-Chr6 128484752 128489494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03237 124 185 Eukaryotic Initiation Factors Gene Family AT2G36660 37.879 9.65e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03237 K12896 - cit:102606969 235.728