Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03191 ATGGAAACACCAAGTTTTTTTCAAAACAGCTTCTGCTCTCAATTCACCTCTGATGATGGCGACAACAACAATAACAATAACAACACCGCTGTAAGCACAGGAGACAATTTCATCGTGGAAGATCTCCTTGACTTTTCGAACGATGACGGTATCATTGCCAACAATAACGGTGTTGTTGCCACCTTGGACTCTGTCACAGGAAACTCTGGTTCAGCCAATTCCTCTAATACTACCGTTGTTGAAAGCTGCAATTCCTCCTCCTTCTCTTTCTCTGGTTGCGAACCCAGTATCATTGCGGATATTGGTAGTCGGAGTCTTGTGGATGGTCATTTCTCTGGTGAACTTTGTGTTCCGTATGACGACCTGGCAGAGTTAGAATGGCTTTCCAATTTTGTGGAGGAATCCTTCTCCAGTGAGGATCTACAAAAGATGCAACTCATCTCAGGAATGAAGAGACCAAACGATGATGCTTCATCGGAGGCCCACAAGTTCCGCGCAGAGCCCAACAGAAAAAGCCCAATATTCAACTCAGAAGTGTCAGTGCCAGCCAAGGCCCGTAGCAAGCGGTCTCGTGTGCCTCCATGCAATTGGACTTCGCGCCTACTGGTACTCTCTCCAACTCCGACTCCCACAACGTCATCATCATCAGAACCTGATGTGATGGTCCCTATTTCTACTCCAACTCCAGTGTCCTTCACTATTCCGGTCACCGGAAAAAAGCCGGGGAAGACAACAGGCAGAAAAAAAGAAGGTGGGGATTGTGGTTCTGGTGATGGTCGCAAGTGCTTGCATTGTGCTACGGACAAGACACCGCAGTGGCGGACTGGGCCCATGGGCCCTAAGACGTTGTGCAATGCTTGTGGTGTGAGGTACAAGTCAGGCCGTCTTGTGCCAGAGTACAGGCCCGCGGCAAGCCCAACGTTTGTGTTAACTAAGCACTCTAACTCACATCGAAAGGTTTTGGAGCTTCGTAGACAAAAGGAGATGATGAGAGCACAACAACACCATCATCAACACCAACAACAGTTCATACAACATCATCATCATCACCAGAACATGATGTTTGATGTACCCACAAACGCTGATGATTACTTGATCCACCAACATGTTGGGCCCGATTTCAGGCAGTTGATTTAG 1137 0.4776 METPSFFQNSFCSQFTSDDGDNNNNNNNTAVSTGDNFIVEDLLDFSNDDGIIANNNGVVATLDSVTGNSGSANSSNTTVVESCNSSSFSFSGCEPSIIADIGSRSLVDGHFSGELCVPYDDLAELEWLSNFVEESFSSEDLQKMQLISGMKRPNDDASSEAHKFRAEPNRKSPIFNSEVSVPAKARSKRSRVPPCNWTSRLLVLSPTPTPTTSSSSEPDVMVPISTPTPVSFTIPVTGKKPGKTTGRKKEGGDCGSGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMMRAQQHHHQHQQQFIQHHHHHQNMMFDVPTNADDYLIHQHVGPDFRQLI 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03191 378 MobiDBLite consensus disorder prediction 206 256 - -
Aip06g03191 378 SMART GATA_3 256 306 IPR000679 GO:0006355|GO:0043565
Aip06g03191 378 PIRSF Txn_fac_GATA_plant 20 352 IPR016679 GO:0003677|GO:0005634|GO:0045893
Aip06g03191 378 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 258 320 - -
Aip06g03191 378 Gene3D - 255 306 IPR013088 GO:0006355|GO:0008270
Aip06g03191 378 PANTHER GATA TRANSCRIPTION FACTOR 1 378 - -
Aip06g03191 378 PANTHER GATA TRANSCRIPTION FACTOR 1 378 - -
Aip06g03191 378 CDD ZnF_GATA 261 308 IPR000679 GO:0006355|GO:0043565
Aip06g03191 378 Pfam GATA zinc finger 262 295 IPR000679 GO:0006355|GO:0043565
Aip06g03191 378 ProSitePatterns GATA-type zinc finger domain. 262 287 IPR000679 GO:0006355|GO:0043565
Aip06g03191 378 ProSiteProfiles GATA-type zinc finger domain profile. 256 292 IPR000679 GO:0006355|GO:0043565
Aip06g03191 378 MobiDBLite consensus disorder prediction 206 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03191 Aip-Chr6 127784781 127787736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03191 36 378 C2C2-Gata Transcription Factor Family AT5G25830 51.966 4.19e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aip06g03191 GATA 3.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03191 - - zju:107420464 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03191 06 127784781 127787736 Aip06g03191 06 127784781 127787736 ECH