LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip06g03161	ATGGCTGTTGCTGAGAATGCCGGGGCCAAAATCGGTGCTTCAAGTGAAGATTTGGAAAAAAGTGTAGTGTCATCTGACTCAAATGCCCCAAACGAAGAACTGGAGAATCCGAAACCCCGAAATGGTTCTGTTGGAAACGGTGTAGAGACCGATCAGAATCTCAACGGTGTTGATGGCGTTGCAGCCACTGTCTCAGTCCCTAACGGCAATCACAAACCCCAAATGGGTCAGATGCAAAATGGTTTGGACACAAACGGTGGTGGTGTCCAGGGGCAGCAGGTTGTGGCGAACAATGGTGGCGGCGGAGGTGGGTTCAAGATGGGCCATCAGATAGGTAATGGAGTGATGAATGGAGGAGAGGACGGCGAGAGCTTCAAACGCGAAATGAGGGATTTGGCTGAGCTCTTGTCAAAGTTGAACCCTATGGCTGAGGAGTTTGTGCCCTCTTCACTTGCAAAGAATCATGGGTACTTGCCCGGAGCTGGAGGGTTCGGTTTCCCTAACAATTTGCTACTTCCTGCAAATTTTGGCAATGCTAATGGACAGCCTAATAGAAGGAGAAAGAATGGCTACAATAACCAGGGGAAGCAAAGAGCAAATCATAAAATAGAAATGGAGAGACGGGAAGAGATGATTAGGAGGACTGTTTATGTCTCCGATATTGATCAACAAGTCACTGAAGAGCAACTGGCAGCTCTCTTTCTTAACTGTGGCCAGGTCGTTGATTGCCGTGTATGCGGGGATCCAAATTCTATTCTTCGTTTTGCCTTCATTGAGTTTACGGATGAAGATGGTGCAAGAGCTGCTTTGAACTTGTCTGGCACCATGCTTGGATATTACCCGGTGAGAGTGCTGCCATCTAAAACTGCCATTGCACCTGTTAATCCGTCATATTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACTATTTATTGCACAAATATTGACAAAAAGGTTACTCAAGCTGACGTTAAACTCTTCTTTGAATCTCTTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGATTACCATCATTCGACTCGAATTGCATTTGTCGAGTTCACAATAGCTGAAAGTGCAATTGCTGCTCTGAACTGCAGTGGTGTGATTTTGGGTACGCTGCCGATAAGGGTAAGTCCATCGAAGACACCAGTCCGTTCTCGGGCACCTCGTGGCTCAGTGCATTGA	1200	0.4717	MAVAENAGAKIGASSEDLEKSVVSSDSNAPNEELENPKPRNGSVGNGVETDQNLNGVDGVAATVSVPNGNHKPQMGQMQNGLDTNGGGVQGQQVVANNGGGGGGFKMGHQIGNGVMNGGEDGESFKREMRDLAELLSKLNPMAEEFVPSSLAKNHGYLPGAGGFGFPNNLLLPANFGNANGQPNRRRKNGYNNQGKQRANHKIEMERREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSYLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTIAESAIAALNCSGVILGTLPIRVSPSKTPVRSRAPRGSVH	399

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip06g03161	399	MobiDBLite	consensus disorder prediction	178	200	-	-
	Aip06g03161	399	MobiDBLite	consensus disorder prediction	178	198	-	-
	Aip06g03161	399	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	214	289	IPR000504	GO:0003723
	Aip06g03161	399	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	313	376	IPR000504	GO:0003723
	Aip06g03161	399	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	216	278	IPR000504	GO:0003723
	Aip06g03161	399	SMART	rrm1_1	215	285	IPR000504	GO:0003723
	Aip06g03161	399	SMART	rrm1_1	312	383	IPR000504	GO:0003723
	Aip06g03161	399	MobiDBLite	consensus disorder prediction	1	55	-	-
	Aip06g03161	399	PANTHER	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE	1	398	-	-
	Aip06g03161	399	SUPERFAMILY	RNA-binding domain, RBD	300	393	IPR035979	GO:0003676
	Aip06g03161	399	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	1	398	-	-
	Aip06g03161	399	CDD	RRM2_CID8_like	307	388	IPR034825	-
	Aip06g03161	399	MobiDBLite	consensus disorder prediction	18	34	-	-
	Aip06g03161	399	SUPERFAMILY	RNA-binding domain, RBD	203	290	IPR035979	GO:0003676
	Aip06g03161	399	CDD	RRM1_CID8_like	212	291	IPR034823	-
	Aip06g03161	399	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	311	387	IPR000504	GO:0003723
	Aip06g03161	399	Pfam	Ataxin-2 C-terminal region	136	150	IPR009818	-
	Aip06g03161	399	Gene3D	-	295	393	IPR012677	-
	Aip06g03161	399	Gene3D	-	177	291	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip06g03161	Aip-Chr6	127384922	127390299	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip06g03161	213	375	Eukaryotic Initiation Factors Gene Family	AT1G34140	25.150	3.99e-10	59.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip06g03161	-		-	aip:107622933	546.584