Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03152 ATGGATTTGGACAGCATTGAGTGTGTGTCATCCTCTGATGGCATGGATGAAGATGAGATCCAACACCATAACCTTCATCCTCATCATCACTCTGAGTTTTCATCTTCGAAGCCTCGCAATGGGGGCGCCAACAACAACAACATCAACAACAACAACAACAACAATAACAATGTTATGGGCGCAACGGTGGTTATTCCTCCTGCAACCAGCGTCCATGAGTTGCTTGAATGTCCCGTTTGCACCAATTCAATGTATCCCCCAATTCATCAGTGCCATAATGGGCATACATTGTGTTCCACATGTAAAACAAGGGTGCACAATCGGTGTCCCACTTGTCGACAAGAGCTTGGAGATATTAGGTGTCTGGCGCTGGAAAAGGTGGCTGAATCGCTCGAGTTACCTTGCAAGTACTACTCCCTCGGATGTCCAGAAATATTTCCATACTACAGCAAGCTGAAGCATGAGACAGTATGCAATTTCAGACCATACAATTGTCCTTATGCTGGATCAGAGTGCTCTATTGTCGGGGACATTCCTTTCCTTGTTGCACATCTGAGGGATGATCACAAGGTGGACATGCACACAGGATGCACATTCAACCACCGCTATGTAAAATCAAATCCCCGTGAAGTTGAGAATGCAACATGGATGCTCACGGTATTTCATTGTTTTGGACAATACTTCTGTCTCCACTTTGAAGCATTCCAGCTAGGCATGGCCCCGGTTTACATGGCATTCCTTCGTTTCATGGGGGACGAGAATGAGGCTCGGAACTATAGCTATAGCCTTGAGGTCGGGGCAAATGGCAGGAAACTCATTTGGGAGGGTACTCCAAGAAGTATCCGGGATAGCCACCGGAAAGTCAGGGATAGCCATGATGGTCTCATCATTCAACGAAATATGGCCTTATTTTTCTCTGGTGGAGATAGGAAGGAACTGAAACTAAGAGTTACGGGAAGAATATGGAAGGAACAACAGAATCCAGATGCCGGAGTGTGCATACCAAATCTTTGTAGCTGA 1020 0.4608 MDLDSIECVSSSDGMDEDEIQHHNLHPHHHSEFSSSKPRNGGANNNNINNNNNNNNNVMGATVVIPPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03152 339 ProSiteProfiles Zinc finger RING-type profile. 77 113 IPR001841 -
Aip06g03152 339 MobiDBLite consensus disorder prediction 36 55 - -
Aip06g03152 339 MobiDBLite consensus disorder prediction 27 55 - -
Aip06g03152 339 SUPERFAMILY TRAF domain-like 130 322 - -
Aip06g03152 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 331 - -
Aip06g03152 339 CDD Sina 191 319 - -
Aip06g03152 339 Pfam Seven in absentia protein family 119 318 IPR018121 GO:0005737|GO:0006511|GO:0007275
Aip06g03152 339 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 331 - -
Aip06g03152 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 183 IPR013083 -
Aip06g03152 339 ProSiteProfiles Zinc finger SIAH-type profile. 130 190 IPR013010 GO:0008270
Aip06g03152 339 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 184 318 IPR008974 GO:0005515
Aip06g03152 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 129 IPR013083 -
Aip06g03152 339 SUPERFAMILY RING/U-box 66 119 - -
Aip06g03152 339 CDD RING-HC_SIAHs 75 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03152 Aip-Chr6 127239191 127243123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03152 47 325 C3H Transcription Factor Family AT2G41980 75.627 7.92e-163 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03152 K04506 - jre:109007585 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02785 07 112952966 112955396 Aip06g03152 06 127239191 127243123 ECH
Aip06g03152 06 127239191 127243123 Aip06g03152 06 127239191 127243123 ECH