Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03128 ATGGAAACAGAGAAGCTTCCAGCAATGGATAATAACACCTTACTATCTGAAACTTTCTTGAACACAAGAGAGTTTGGTGGAGAGGATCTGTTTTCCATTTTAGAGAGCCTTGAAGACTTCAATAGTCCTCCTCCTCCTCCTCCAAGGAAGAGACAGAAGGTTACTGCATCAGCATCCGAAGATGGACAAGAAAGGGTATTATCGTCACATATAACTGTTGAGCGCAACCGGAGAAAGCAAATGAATCACCATTTGTCTGTCTTGAGGTCACTTATGCCCTCTTTTTATGTCAAACGAGGAGATCAAGCATCAATAATTGGAGGTGTAGTTGATTACATCAACGAATTACAGCAAGTTCTACAATGCCTAGAGGCCAAGAAACACAGAAAGGTATTTTACACAGATAACGTACTAAGCCCAAGACTAATTATTCCAAGCCCAAAATTAAGCCCAAGAAAACCGCCACTAAGCCCAAGAATACTAACCCTCCCGCCCATTAGTCCAAGAACTCCACAACCTGGAAGCCCATGGTTGCACTCCATCGAGCCTTCTCCTTCTTCTTCTGGATCATCCGCTATGAATGATAATATGAATGAGCTTGTTGCGAATTCAAAGTCGGTGATTGCTGACGTGGAGGTTAAGTTTTGCGGTCCGCATGTATTAGTGAAAACTGTGTCTCCAAGAATTCCTGGGCAAGCCATGAGGATAGTATCAGCGCTTCAAGACCTTGCTCTTGAGATTCTTCATCTCACCATTACCACTTCTGATGAAACCATGCTATACTCTTTCACTATTAAGATTGGGATTGAATGCCAACTGAGTGCGGAAGAACTAGCTCAACATATCCAGCAAACATTCTGCTAA 864 0.4271 METEKLPAMDNNTLLSETFLNTREFGGEDLFSILESLEDFNSPPPPPPRKRQKVTASASEDGQERVLSSHITVERNRRKQMNHHLSVLRSLMPSFYVKRGDQASIIGGVVDYINELQQVLQCLEAKKHRKVFYTDNVLSPRLIIPSPKLSPRKPPLSPRILTLPPISPRTPQPGSPWLHSIEPSPSSSGSSAMNDNMNELVANSKSVIADVEVKFCGPHVLVKTVSPRIPGQAMRIVSALQDLALEILHLTITTSDETMLYSFTIKIGIECQLSAEELAQHIQQTFC 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03128 287 Pfam Helix-loop-helix DNA-binding domain 69 117 IPR011598 GO:0046983
Aip06g03128 287 Gene3D - 57 130 IPR036638 GO:0046983
Aip06g03128 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 116 IPR011598 GO:0046983
Aip06g03128 287 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 49 287 - -
Aip06g03128 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 131 IPR036638 GO:0046983
Aip06g03128 287 MobiDBLite consensus disorder prediction 38 66 - -
Aip06g03128 287 MobiDBLite consensus disorder prediction 154 195 - -
Aip06g03128 287 MobiDBLite consensus disorder prediction 173 195 - -
Aip06g03128 287 PANTHER TRANSCRIPTION FACTOR FAMA 49 287 IPR044283 GO:0003700|GO:0010052
Aip06g03128 287 SMART finulus 71 122 IPR011598 GO:0046983
Aip06g03128 287 MobiDBLite consensus disorder prediction 154 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03128 Aip-Chr6 126772934 126775767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03128 19 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 46.407 1.66e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip06g03128 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03128 K20558 - gmx:100809717 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03128 06 126772934 126775767 Aip06g03128 06 126772934 126775767 ECH
Aip03g04102 03 124752708 124755830 Aip06g03128 06 126772934 126775767 ECH