Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03123 ATGAGTAGAAGTAGAAGCAGAAGCAGGTGTTGGTTAGTTGGGATCTTGATCTTGGTAGTGAGAGTGTTGGGAGGAAATGGGTACCCATCTGAGGATCTGGTGGTCAACCTTCCTGGACAACCCAAAGTTGACTTCAACCAATATGCTGGCTATGTTGATATTGATTCCAACCATGGAAGAAGCCTCTTCTACTATTTTGTTGAAGCTGCTTTTCATCCTCACAATAAGCCCCTCACTCTTTGGCTCAATGGAGGTCCAGGGTGTTCTTCCATTGGAGGAGGTGCATTTACTGAATTGGGACCCTTTTTTCCTAAAGGAGATGGACGTGGTCTAAGAAGAAATTCTAAGTCATGGAACAAAGCATCCAACCTTCTGTTTGTGGAGTCTCCTGCTGGAGTTGGTTGGTCATACTCAAATACAACTTCAGATTATAATGCTGGGGATGCGTCCACCGCCAATGATATGTATTTGTTCATGCTGAAATGGTACGAGAAGTTCCCATCATACAGATCAAGAGAGCTGTTCCTCACAGGAGAAAGCTATGCAGGACACTACATACCACAGTTAACTAATGCTCTACTGGATCATAATGCTCGTTCAACTGGTTTCAAATTCAACATTAAAGGGGTTGCTATTGGAAACCCACTTCTAAGACTTGATCGCGATATACCAGCAACATACGAATACTTTTGGTCCCATGGAATGATTTCTGATGAAGTTGGACTTGCTATTATGAATGATTGCGACTTCGATGATTATGTGTATGAAAATCCTCACAATGTTTCTCATTCATGCACCAACGCCATACGCGAAGCGAATAGTATAGTGGGAGATTATATAAATGAATATGATGTGATTCTTGATGTTTGTTATCCATCCATTGTGGAACAAGAGTTGAGATTGAAAAAAATGGCTACGAAAATAAGTGTAGGTGTTGATGTCTGTATGAGTTTCGAAAGGCGATTTTACTTCAACCTTCCTGAGGTTCAGAAGGCCCTCCATGCGAATCGCACCAAACTTCCTTATAGCTGGTCCATGTGTAGTCAAGTTCTAAACTATAGTGAAACTGATGGTAACATCAACATCCTTCCAATTCTCAAAAGGATAGTTCAAAACCATATCCCAATATGGATTTTCAGTGGCGACCAAGATTCGGTTGTGCCGTTGTTGGGATCTCGAATGCTAATTCGTGAGCTAGCTCACGAATTACACCTGAAGGTTACAGTTCCTTATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTGACAGAATATGGGAATTCGTTGACTTTTGCAACTGTAAGAGGAGCTGCTCACATGGTTCCTTACTCACAACCTTCAAGAGCATTGCATTTATTCACTTCATTTCTGCGTGCTACCAGGTTGCCAAATACAACGGGTCCTTCCATTCTTCATTAA 1425 0.4211 MSRSRSRSRCWLVGILILVVRVLGGNGYPSEDLVVNLPGQPKVDFNQYAGYVDIDSNHGRSLFYYFVEAAFHPHNKPLTLWLNGGPGCSSIGGGAFTELGPFFPKGDGRGLRRNSKSWNKASNLLFVESPAGVGWSYSNTTSDYNAGDASTANDMYLFMLKWYEKFPSYRSRELFLTGESYAGHYIPQLTNALLDHNARSTGFKFNIKGVAIGNPLLRLDRDIPATYEYFWSHGMISDEVGLAIMNDCDFDDYVYENPHNVSHSCTNAIREANSIVGDYINEYDVILDVCYPSIVEQELRLKKMATKISVGVDVCMSFERRFYFNLPEVQKALHANRTKLPYSWSMCSQVLNYSETDGNINILPILKRIVQNHIPIWIFSGDQDSVVPLLGSRMLIRELAHELHLKVTVPYGAWFHKGQVGGWVTEYGNSLTFATVRGAAHMVPYSQPSRALHLFTSFLRATRLPNTTGPSILH 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03123 474 Gene3D alpha/beta hydrolase 29 291 IPR029058 -
Aip06g03123 474 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Aip06g03123 474 Gene3D - 362 461 - -
Aip06g03123 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Aip06g03123 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Aip06g03123 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Aip06g03123 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 431 444 IPR001563 GO:0004185|GO:0006508
Aip06g03123 474 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 13 468 IPR001563 GO:0004185|GO:0006508
Aip06g03123 474 Pfam Serine carboxypeptidase 39 460 IPR001563 GO:0004185|GO:0006508
Aip06g03123 474 PANTHER CARBOXYPEPTIDASE 13 468 - -
Aip06g03123 474 SUPERFAMILY alpha/beta-Hydrolases 30 462 IPR029058 -
Aip06g03123 474 Gene3D - 315 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03123 Aip-Chr6 126678570 126683758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03123 321 464 Calmodulin-binding Proteins AT2G22960 25.000 2.63e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03123 K16297 - gmx:100801752 828.165