Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03090 ATGAAGCACATTACTGCATTCAGCAGAGGATCTGGCTCATCACGTCTTCACTATTATTCACATTTTCACTACTCCGAATCCATTGCGAGGAGAAAGAAAATTACGATGACGAATTTGGCAACACGTGACGCCCAAGTTTCGCTACTCCATCACTTAATGCAAATTCACATTCACATCTCACTGCTTCCAAAAAGGGTCAATGTTCTATGCAATGGTGTGGAAGGAATCTATCATCCAAGCCTTCACTTAGTTGTTTGCAAGTGTGGTTTTTGTGAGACAGAAAAGCAATCGCTTAGCGAATGGGAACGCCACACAGGTTCCAAATTGAGAAATTGGAGAACAAGTGTTCGGGTGAAAGGCTCCATGCTATCACTGGAACAATGGATGCTGCAATTGGCTGAGTTTCATTCTAATGCCGTAGTTTCTATCAAACCCAAAAAACCTTCCTTAAAAGAAAGGAAGCAGAAGTTGCTTACATTTTTGCAAGAGAAGTATGAACCGGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTTTGCAGATGGGTTGAAGATTGGGACTACAACAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTACGGTGCAAGAAATGTTAGAGACTTCACATCATGGGTGTGTAAAGCTTGTGAAACACCTGAAATTAAACGGGAGTGTTGTCTTTGTCCCGTAAAAGGTGGTGCTCTAAAGCCAACAGATATTGACACATTATGGGTTCATGTCACTTGTGCTTGGTTTCGGCCTGAAGTGGCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTTAGTATTCCGTCAAGTTCTTTTGTTAAGATTTGTGTTATTTGTAAGCAAATTCATGGTTCATGCACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGCTACCGAATGGAGTTGCACATTTCGGAGAAAAATGGTAAACAGACAACAAAAATGGTTTCCTATTGTGCTTATCACAGGGCTCCCAATCCAGACACTGTTTTGATTATGCAAACCCCCCTTGGGGTCATTTCAACTAAAAGTCTTCTACAAACTAAGAAAAAAACGGGTTCCAGGCTAATTTCCTCTAGAAGAACAAAGGTAGAAGAAACCCCTCAAGCAGATGATACTGAACATGAGCCATTCTCTGCCGCTAGATGTCGAATCTTTCAAAGAACAAACTACACTAAAAAGAAATCAGCAGCTGATGCCGTTCCTCATCATGTGAGGGGTCCCTACCATCATCCTTTAGATGCAATACAGAGTAACCTGTTAATCAGAGAGCGCCTTTACCACTTACAGAGAACCGAAAATGAAAGGGTTTGCTTTGGTAGATCAGGCATTCATGGATGGGGACTTTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTGAGACGTAGCATTGCGGATCTCAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTATCTATTTAAGATAAGTGAAGAAGTGGTAGTAGATGCCACTGATAAAGGAAATATAGCAAGGCTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTAGGTGATGATGAGAGCCGGATCGCACTCATTGCCAAGACTGATGTAACGGCTGGCGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTTAAAGTCCCTTGTTTATGCAAAGCTCCGAACTGCCGCAAGTTCATGAATTAG 1794 0.4169 MKHITAFSRGSGSSRLHYYSHFHYSESIARRKKITMTNLATRDAQVSLLHHLMQIHIHISLLPKRVNVLCNGVEGIYHPSLHLVVCKCGFCETEKQSLSEWERHTGSKLRNWRTSVRVKGSMLSLEQWMLQLAEFHSNAVVSIKPKKPSLKERKQKLLTFLQEKYEPVCAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPEIKRECCLCPVKGGALKPTDIDTLWVHVTCAWFRPEVAFASDEKMEPALGILSIPSSSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHISEKNGKQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKTGSRLISSRRTKVEETPQADDTEHEPFSAARCRIFQRTNYTKKKSAADAVPHHVRGPYHHPLDAIQSNLLIRERLYHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIALIAKTDVTAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03090 597 ProSiteProfiles Post-SET domain profile. 581 597 IPR003616 -
Aip06g03090 597 ProSiteProfiles Extended PHD (ePHD) domain profile. 228 343 IPR034732 -
Aip06g03090 597 Pfam SET domain 466 571 IPR001214 GO:0005515
Aip06g03090 597 ProSiteProfiles SET domain profile. 455 572 IPR001214 GO:0005515
Aip06g03090 597 SMART set_7 455 578 IPR001214 GO:0005515
Aip06g03090 597 CDD PHD_ATX3_4_5_like 176 222 IPR042011 -
Aip06g03090 597 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 226 IPR013083 -
Aip06g03090 597 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 62 597 IPR025780 -
Aip06g03090 597 SUPERFAMILY FYVE/PHD zinc finger 175 239 IPR011011 -
Aip06g03090 597 PANTHER PHD FINGER PROTEINS 60 597 - -
Aip06g03090 597 SMART PostSET_3 581 597 IPR003616 -
Aip06g03090 597 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 60 597 - -
Aip06g03090 597 Pfam PHD-finger 189 223 - -
Aip06g03090 597 Gene3D SET domain 364 597 IPR046341 -
Aip06g03090 597 CDD SET_SETD1-like 444 593 - -
Aip06g03090 597 ProSitePatterns Zinc finger PHD-type signature. 177 222 IPR019786 -
Aip06g03090 597 SMART PHD_3 287 343 IPR001965 -
Aip06g03090 597 SMART PHD_3 176 223 IPR001965 -
Aip06g03090 597 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 345 IPR013083 -
Aip06g03090 597 MobiDBLite consensus disorder prediction 376 396 - -
Aip06g03090 597 ProSiteProfiles Zinc finger PHD-type profile. 174 225 IPR019787 -
Aip06g03090 597 CDD ePHD_ATX3_4_5_like 231 342 IPR041955 -
Aip06g03090 597 Pfam PHD-zinc-finger like domain 230 342 - -
Aip06g03090 597 MobiDBLite consensus disorder prediction 378 396 - -
Aip06g03090 597 SUPERFAMILY SET domain 448 594 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03090 Aip-Chr6 126146450 126152264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03090 177 342 C2H2 Transcription Factor Family AT3G14740 33.908 2.48e-21 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip06g03090 zf-HC5HC2H_2 1e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03090 - - aip:107647579 1100.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03090 06 126146450 126152264 Aip06g03090 06 126146450 126152264 ECH