Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03082 ATGGAGTTCGGTAGGATCGGACCCACCGACCCGGGTGGCTCTTCACGCCGTTCTACTGCTCCACTCACCGGAGCTTCTTCCGATTCCACTTCTTCCACAACAAAGAAGAAGCTCATCATGATCTCCCTCCTCGCCGCAGCCTTGATTGTCGCCTCCGCTGTCTCTGCTGCTCTAATTGCCGTCACCCGCTCCCGTGCCTCGGCCGGGAACTCGCCGAACCTCCGCCGGGAACCAACGCAGGCAATCTCCAAGACCTGCAGCAAGACTCGGTTCCCCACACTTTGTATAACCTCTCTCATGGATTTCCCGGGGTCTGAAACCGCCACGGAGCAGGACCTTGTCCACATTTCCGTCAACATGACCCTCCACCATTTCAGCACCGCCTTCTACGCCTCCACGGGCATCGCCTTCGGCGACACGGACACACGACTCCGTGCCGCCTACGAAGACTGCCTCGAACTCATGGAGGACTCCATGGATTCGCTGTGGCGGTCACTGAGCTCGGTGGCCCCGTCCTTGGATTCATCATCCTTCGGCGATGAAGCCATAAGGCCCGCCGCCGTGGGTTCCACCGAGGACGTGACGACCTGGCTCAGCGCTGCACTGACGAACCAGGACACGTGCTCGGAGGGGCTCGAGAACGCGACGGGAACACTGAAGGACCAGATGGTTAATAATTTGAAGAACCTGGCAGAACACGTGAGCAATTCTCTCGCGATATTCTCGGCCGGAAGTGGCACTGGCGATTTCTCGGGGGTGCCTATACAGAACAAGAGACGGTTAATGGGAACCGGAGAGGAGGAGAACAAATCCGATATCTCGCGAGATAATGATAATAATAATCATTTCCCGAGATGGTTGAGCAAACGAGATAGGAGATTGCTGAGTTTACCGGTATCGGCGATACAAGCCGATATAATAGTGTCGAAGAACGGTGATGGAACGGTGAAGACAATCGCAGAGGCGATTAAGAAGGCGCCGGAGAAAAGTAGCCATCGCTTCATCATATACGTTAAGCAAGGAAGGTATGAGGAGGATACTTTGAAAGTGGGTAGAAAGAAAACCAACATAATGTTCATAGGAGATGGAAGGGGCAAAACGGTCATCACAGGAAAGAAAAATGTTGCTGATGGCATCACCACATTCCGCACAGCATCCTTCGCTGCTAGTGGTGCCGGCTTCATTGCACGAGACATCACATTTGAAAACTACGCCGGACCACAGAAGCACCAAGCCGTGGCGCTTCGCGTAAGCGCCGACCACGCGGTGGTGTACCGGTGCAGCATCAAAGGCTACCAAGACGCATGCTATGTACACTCCAACCGCCAGTTCTTCCGGGAATGCGATATTTACGGCACCGTAGATTTCATATTTGGAAATGCTGCAGTGGTTTTCCAAAAATGTATTATGTATGCTAGAAAGCCCATGGCCCAACAAAAAAACACTATCACGGCCCAAAACAGAAAGGACCCAAATCAAAACACGGGCATATCCATCCACGATTGTCGGATACTACCCGCCCCGGATCTCGCGGCTGCCAAAGGCAGCGTTTCCACCTTTTTGGGCCGCCCATGGAAGCAATACTCAAGAACAGTGTACTTATTGTCTTACATGGGTGATCACATAAACCCAAGTGGGTGGTTGCCGTGGAATGGGGACTTTGCATTGGACACATTGTATTATGGTGAGTACATGAATTCCGGGCCAGGTGCGGCCGTGGGTCAACGGGTCAAATGGAAGGGGTACCGGGTTATCACGTCCACAGTGGAGGCAAGTAGATTCACGGTGGCCCAATTTATCTCCGGCTCGGCGTGGCTACCATCCACCGGAGTGGCATTCTTGGCTGGGTTGTCAACTTGA 1860 0.5344 MEFGRIGPTDPGGSSRRSTAPLTGASSDSTSSTTKKKLIMISLLAAALIVASAVSAALIAVTRSRASAGNSPNLRREPTQAISKTCSKTRFPTLCITSLMDFPGSETATEQDLVHISVNMTLHHFSTAFYASTGIAFGDTDTRLRAAYEDCLELMEDSMDSLWRSLSSVAPSLDSSSFGDEAIRPAAVGSTEDVTTWLSAALTNQDTCSEGLENATGTLKDQMVNNLKNLAEHVSNSLAIFSAGSGTGDFSGVPIQNKRRLMGTGEEENKSDISRDNDNNNHFPRWLSKRDRRLLSLPVSAIQADIIVSKNGDGTVKTIAEAIKKAPEKSSHRFIIYVKQGRYEEDTLKVGRKKTNIMFIGDGRGKTVITGKKNVADGITTFRTASFAASGAGFIARDITFENYAGPQKHQAVALRVSADHAVVYRCSIKGYQDACYVHSNRQFFRECDIYGTVDFIFGNAAVVFQKCIMYARKPMAQQKNTITAQNRKDPNQNTGISIHDCRILPAPDLAAAKGSVSTFLGRPWKQYSRTVYLLSYMGDHINPSGWLPWNGDFALDTLYYGEYMNSGPGAAVGQRVKWKGYRVITSTVEASRFTVAQFISGSAWLPSTGVAFLAGLST 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03082 619 TIGRFAM PME_inhib: pectinesterase inhibitor domain 64 241 IPR006501 GO:0004857
Aip06g03082 619 PANTHER PECTINESTERASE 26 617 - -
Aip06g03082 619 Pfam Plant invertase/pectin methylesterase inhibitor 81 240 IPR006501 GO:0004857
Aip06g03082 619 PANTHER PECTINESTERASE 26 617 - -
Aip06g03082 619 CDD PMEI-like_3 86 246 - -
Aip06g03082 619 SMART PMEI_2 77 240 IPR006501 GO:0004857
Aip06g03082 619 MobiDBLite consensus disorder prediction 12 31 - -
Aip06g03082 619 Gene3D Invertase/pectin methylesterase inhibitor family protein 79 243 IPR035513 -
Aip06g03082 619 Pfam Pectinesterase 305 602 IPR000070 GO:0030599|GO:0042545
Aip06g03082 619 Gene3D - 299 617 IPR012334 -
Aip06g03082 619 MobiDBLite consensus disorder prediction 1 31 - -
Aip06g03082 619 SUPERFAMILY Pectin lyase-like 300 616 IPR011050 -
Aip06g03082 619 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 80 242 IPR035513 -
Aip06g03082 619 ProSitePatterns Pectinesterase signature 2. 450 459 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03082 Aip-Chr6 125916532 125922297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03082 1 618 Carbohydrate Esterase AT5G53370 61.031 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03082 - - gmx:106796002 898.271