Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03077 ATGGAACAAAGCATCCCAATAAAACAAACTAGACATCGTAGTGTCACCAACAAGTTTATGAAACAAAAGAAAAATTTTGATCTTGTCCATCTCAATGATCCCATTTCCAGAAAGCCTAAAGTAATTCGTATATTTCTAACTGATCAAGATGCTACTGACTCTTCCGGTGACGAAGAAGAAGAGTTCTTCCCTCGCCAAAGGGTGAGGCATTACATCAACGAAATTAATATTCACCCACCCTGCGAAACCGTTACCAATTCCCGAAAGAGGCTTGCCGGAATATCCTCCCCTTCATGTCGGCGACCAGTGAAGACCACTGTGGCAGCCGCCACCACCCCAACCACAGCCACCACCAATAACAACAATGGCAGAAAGTACCGTGGTGTAAGACAAAGGCCATGGGGTAAATGGGCGGCGGAGATTCGAGATCCAAACCGGCACATCCGAGTTTGGCTGGGAACTTTTGACACTGCCGAAGAAGCTGCCAGGGAGTATGATAATGCCGCGATCAAGTTTCGCGGTCCGAAAGCTCTAACCAACTTTCCGATATCACCACCATCACAAGAAAAGAATGTAGACATCTACGACTCATCATGCGAAGATGAGTGCCTCGTCAACATGTCTTCATCACCTACTTCGGTTCTCCATTCCACAAGTCCCAAAACAGGAAAACCACAGAAGCACCACAAAGAAAACGATGGAGAGTGTGAGGGGGAGACGAGTTTCTTTGATGATGAGACGTTGGGGAATGACATGTTTAACTTTGCAACTTTGCATGATGAGTGTGTGGCTACAATGTTTGATGATGAAACTACTTCTGCACGGGTCTTTGTTAGTGAAAGTTTCAAGTTTGGTGACCACATTGAGCTTGGTAATGCAAGTTTGTACCAGGTTGACGATTATTTTGAAGAAATTTTGCTAGGCTCGGATCCTCTTGTGGTGCTGTGA 948 0.4536 MEQSIPIKQTRHRSVTNKFMKQKKNFDLVHLNDPISRKPKVIRIFLTDQDATDSSGDEEEEFFPRQRVRHYINEINIHPPCETVTNSRKRLAGISSPSCRRPVKTTVAAATTPTTATTNNNNGRKYRGVRQRPWGKWAAEIRDPNRHIRVWLGTFDTAEEAAREYDNAAIKFRGPKALTNFPISPPSQEKNVDIYDSSCEDECLVNMSSSPTSVLHSTSPKTGKPQKHHKENDGECEGETSFFDDETLGNDMFNFATLHDECVATMFDDETTSARVFVSESFKFGDHIELGNASLYQVDDYFEEILLGSDPLVVL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03077 315 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 306 - -
Aip06g03077 315 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Aip06g03077 315 MobiDBLite consensus disorder prediction 209 237 - -
Aip06g03077 315 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Aip06g03077 315 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Aip06g03077 315 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 5 306 - -
Aip06g03077 315 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
Aip06g03077 315 Gene3D AP2/ERF domain 124 184 IPR036955 GO:0003700|GO:0006355
Aip06g03077 315 SUPERFAMILY DNA-binding domain 125 184 IPR016177 GO:0003677
Aip06g03077 315 CDD AP2 125 184 IPR001471 GO:0003700|GO:0006355
Aip06g03077 315 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03077 Aip-Chr6 125805986 125806933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03077 6 216 AP2-EREBP Transcription Factor Family AT4G27950 44.144 2.15e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip06g03077 AP2 1.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03077 - - adu:107494931 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03077 06 125805986 125806933 Aip06g03077 06 125805986 125806933 ECH