Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03072 ATGAGCCAGTGTGTTCCCAGCTGGGAGGTGGAGGATACCAATCCACCGCCCCCAAGACCCTCTCTACGTTCCAACTCCAACTCAACCATCCCTGACGTTCCCATGTTAGACTATGAAGTCGCAGAACTAACATGGGAAAATGGACAGCTATCAATGCATGGCTTAGGGTTCCCGCGAGTGCCGACCAAGTCCTCGGCGGTTACAACAACCGCCAATAAGTACACATGGGAAAAGCCTCGTGCAAGTGGCACATTGGAATCCATAGTCAACCAAGCAACTACCACACCCCAAAACGCCAAATCAACAGCCGTCCACGGTTTCGGCGGTGTCTATGAAAATCTGTTAGTCCCATGGGTTGATCCCCACCGTGTCCCGGCCACCGTTATTTCTCCGGGAACTTCAAACACGGTGACCATGGACGCGCTGGTACCGTGCTCAAACCGGGTAGAGGAGCAAAGAACGCCTCAAGTTATGGACTCCATCTCCGGAGGGCTTGGAGCGTGCATGGCGGGTCGCACCACACGTATGGGCGCCGGTGATGCCAAAGATGGAGGCGCCCTTGAAAAACGCGCCGCCATGGTGAGACGTGTCCCGGCACCGACGGTGTCGGCACATGAGATGAGTAGCAGGGATCAGAGTGTGAGTGGCAGCGCCACCTTTGGGAGGGAAAGCCGGCACGTGACACTTGACACGTGCGAGAGGGAGTTCGGAGTGGGTTTCACTACCTCGACGTCGATGGGGTCGCCGGAAAATACAAGCTCTGCAAAGCAGTGCACCAAGACCAACACCATTGACGACCATGATTCCGTTTGCCACAGTAGATCAATGGAGGAGAAGAAGAAAGAAACTGGAAAATCTTCTGTGTCCACTAAAAGGAGTAGAGCCGCAGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAAAGGATGAAGACATTGCAAAAGCTGGTCCCAAATTCTAGCAAGACGGACAAAGCTTCAATGTTGGATGAAGTGATAGAATATCTTAAACAGTTGCAAGCACAAGTGCAGATGGTGAACAGGATCAACATGTCATCCATGATGCTTCCCATGACCATGCAACAACAGCTTCAAATGTCAATGATGGCTCCCATGGGCATGGGAATGGGGATGGGGATGGGCATGGGCATGGCGGGGATGGGCATGGGCATGGATATGAACACCCTTAGTCGCACTAATATCCCTCCTGGAATCCCTCCAGTCCTCCACCCTTCTCCCTTCATGCCTATGCCTTCTTGGGATGCTGCTGCTACCGCCACTGCTGCCGCCGCAACTGGAGCTGCCGACCGACTTCAAGGACCTACACCCTCCGCCATGCCTGACCATTTATCCTCATTTTTCGGATGTCCATCACAGCCCATGAGCATGGATGCGTACAGTAGGATTGCTGCCATGTACCAGCAGCTTCAGCACCAACAACCTCCACCTTCAGGTTCCAATAAGACCTGA 1482 0.5304 MSQCVPSWEVEDTNPPPPRPSLRSNSNSTIPDVPMLDYEVAELTWENGQLSMHGLGFPRVPTKSSAVTTTANKYTWEKPRASGTLESIVNQATTTPQNAKSTAVHGFGGVYENLLVPWVDPHRVPATVISPGTSNTVTMDALVPCSNRVEEQRTPQVMDSISGGLGACMAGRTTRMGAGDAKDGGALEKRAAMVRRVPAPTVSAHEMSSRDQSVSGSATFGRESRHVTLDTCEREFGVGFTTSTSMGSPENTSSAKQCTKTNTIDDHDSVCHSRSMEEKKKETGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMVNRINMSSMMLPMTMQQQLQMSMMAPMGMGMGMGMGMGMAGMGMGMDMNTLSRTNIPPGIPPVLHPSPFMPMPSWDAAATATAAAATGAADRLQGPTPSAMPDHLSSFFGCPSQPMSMDAYSRIAAMYQQLQHQQPPPSGSNKT 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03072 493 Pfam Helix-loop-helix DNA-binding domain 299 344 IPR011598 GO:0046983
Aip06g03072 493 MobiDBLite consensus disorder prediction 240 260 - -
Aip06g03072 493 MobiDBLite consensus disorder prediction 240 307 - -
Aip06g03072 493 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 490 IPR031066 -
Aip06g03072 493 PANTHER TRANSCRIPTION FACTOR UNE10 1 490 - -
Aip06g03072 493 CDD bHLH_AtPIF_like 294 355 - -
Aip06g03072 493 MobiDBLite consensus disorder prediction 1 31 - -
Aip06g03072 493 MobiDBLite consensus disorder prediction 261 288 - -
Aip06g03072 493 MobiDBLite consensus disorder prediction 205 222 - -
Aip06g03072 493 MobiDBLite consensus disorder prediction 199 222 - -
Aip06g03072 493 Coils Coil 300 320 - -
Aip06g03072 493 Gene3D - 289 354 IPR036638 GO:0046983
Aip06g03072 493 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 294 343 IPR011598 GO:0046983
Aip06g03072 493 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 356 IPR036638 GO:0046983
Aip06g03072 493 SMART finulus 300 349 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03072 Aip-Chr6 125761175 125768104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03072 1 471 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 46.281 1.98e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip06g03072 HLH 7.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03072 - - ahf:112697399 876.7