Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03070 ATGGCTCTTACACTTCAGTGTGCCCTCTCTCACATACTCAGTTTCCTAGTGTTCCTGTCAATATTCCTAGTGAACCCTTCCTTCTGCTTCAACCCTAAAAAGCTTGTGAATGCTTCATTCTCATACACCCCATCTGGTTCAGATTGGTCACCGGCACTTGCCACTTGGTATGGACCTGCTAACGGTGATGGAAGTGAAGGTAATAATAACGTCATTGCCATGCAATTTTTCGTGAGGTGCACTGGGAATTCAGCATGCTCGGGAGAGCCTGTGAAGATAGTGATGACAGATGAGTGCGATGGATGTGGTTCAGATGCCGAATACCATTTTGATTTGAGTGGCACTGCTTTTGGTGCCATGGCTCTCTCAGGTCAAGATGGCACCTTGCGCAATGCTGGCAAAATCAACATTCAGCATCGAAGAGTTGAATGCAACTACCCTGGTGTGTCAATTGCATTCCACGTGGATGCTGGATCGAACCAAGAATACTTCGCTGCCGTGATTGAATACGAGGATGGAGATGGTGACCTTTCAAAAGTTGAACTCAAAGAAGCACTTGACTCAGCCTCATGGTACACCATGGATCAATCATGGGGTGCTGTTTGGAAACTTGACAAAGGGTCACCACTCAGAGCACCTTTCTCTCTTCGGCTAACCACACTCGAGTCCGGTAACTCTATTGTGGCCAACAATGTCATACCTGCTGGCTGGGTTCCCGGTCACACCTACAGATCCATTGTTAATTTTCAAACCTAG 756 0.4709 MALTLQCALSHILSFLVFLSIFLVNPSFCFNPKKLVNASFSYTPSGSDWSPALATWYGPANGDGSEGNNNVIAMQFFVRCTGNSACSGEPVKIVMTDECDGCGSDAEYHFDLSGTAFGAMALSGQDGTLRNAGKINIQHRRVECNYPGVSIAFHVDAGSNQEYFAAVIEYEDGDGDLSKVELKEALDSASWYTMDQSWGAVWKLDKGSPLRAPFSLRLTTLESGNSIVANNVIPAGWVPGHTYRSIVNFQT 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03070 251 SUPERFAMILY PHL pollen allergen 151 245 IPR036749 -
Aip06g03070 251 Gene3D - 73 145 IPR036908 -
Aip06g03070 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 76 149 IPR007112 -
Aip06g03070 251 Gene3D - 146 250 IPR036749 -
Aip06g03070 251 PANTHER EXPANSIN-B3 11 68 - -
Aip06g03070 251 PANTHER EXPANSIN-B3 76 250 - -
Aip06g03070 251 PRINTS Major pollen allergen Lol pI signature 80 90 IPR005795 GO:0005576|GO:0019953
Aip06g03070 251 PRINTS Major pollen allergen Lol pI signature 153 168 IPR005795 GO:0005576|GO:0019953
Aip06g03070 251 PRINTS Major pollen allergen Lol pI signature 200 217 IPR005795 GO:0005576|GO:0019953
Aip06g03070 251 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Aip06g03070 251 PRINTS Major pollen allergen Lol pI signature 121 136 IPR005795 GO:0005576|GO:0019953
Aip06g03070 251 SUPERFAMILY Barwin-like endoglucanases 38 148 IPR036908 -
Aip06g03070 251 PANTHER EXPANSIN-B2-RELATED 76 250 - -
Aip06g03070 251 Pfam Lytic transglycolase 54 138 IPR009009 -
Aip06g03070 251 Pfam Expansin C-terminal domain 151 234 IPR007117 -
Aip06g03070 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 245 IPR007117 -
Aip06g03070 251 PANTHER EXPANSIN-B2-RELATED 11 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03070 Aip-Chr6 125695246 125697793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03070 25 249 Expansin Gene Family AT1G65680 51.587 8.06e-83 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03070 - - gmx:548090 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03070 06 125695246 125697793 Aip02g02522 02 99383823 99386753 PCT