Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03048 ATGGAAAGTGATGATACTGAAGAAAAATTCCTTAGCACTGTGCAAGTCTCCACCACTTCAAACTCCTCAAATTCAAGCACCATTAAAGAAAGAATCTCATCAAGAAGAGCATGTCAAATGTCCAAAAACGGCAACGAGTGCAAGAAAATGGAGAAGAACAATGGCGACTACTACGCAGGGATGCATCACCCAACATACAGAGGTGTGAGAATGAGGGCATGGGGGAAGTGGGTGTCTGAGATCCGGGAGCCAAGAAAGAAATCAAGAATTTGGCTGGGAACATATAGAACCGCTGAAATGGCGGCAAAAGCGCATGACGTGGCGGCTTTAGCCATCAAAGGCCCTTCAGCTTACCTCAATTTCCCTAAAATGGCTCGGCGTTACCCAAGGCCAGTCAGTACATCTCCTAAGGACATTCAAGCTGCGGCCTCCAAGGCGGCAGCCGTCGAGAACAATACTGAAGCTGATGCTGAACAAGAACAACAAAATCATGGCCTAATAATGGAATCTTCAACTTCCACTAATAATAGTAATGAGCAAGAATCTTCAAGTATGGATGATGATGATGATGGCGCATTGTTTGACCTGCTACCAGATCTTTTCTCCGACGATGGAAAGAGTACTGCATCTTCTTCCTCTTATTCTCCTTCTTGGCATCTACTATTTGCAGTTGATTATGGATTCAGGCTTGAGGAGCATTTTTTGTGGGAGAATTAA 717 0.4449 MESDDTEEKFLSTVQVSTTSNSSNSSTIKERISSRRACQMSKNGNECKKMEKNNGDYYAGMHHPTYRGVRMRAWGKWVSEIREPRKKSRIWLGTYRTAEMAAKAHDVAALAIKGPSAYLNFPKMARRYPRPVSTSPKDIQAAASKAAAVENNTEADAEQEQQNHGLIMESSTSTNNSNEQESSSMDDDDDGALFDLLPDLFSDDGKSTASSSSYSPSWHLLFAVDYGFRLEEHFLWEN 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03048 238 MobiDBLite consensus disorder prediction 154 181 - -
Aip06g03048 238 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Aip06g03048 238 MobiDBLite consensus disorder prediction 1 47 - -
Aip06g03048 238 SUPERFAMILY DNA-binding domain 65 122 IPR016177 GO:0003677
Aip06g03048 238 Gene3D AP2/ERF domain 65 124 IPR036955 GO:0003700|GO:0006355
Aip06g03048 238 CDD AP2 66 122 IPR001471 GO:0003700|GO:0006355
Aip06g03048 238 MobiDBLite consensus disorder prediction 10 41 - -
Aip06g03048 238 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Aip06g03048 238 PANTHER ETHYLENE RESPONSE FACTOR 9 238 - -
Aip06g03048 238 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Aip06g03048 238 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Aip06g03048 238 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Aip06g03048 238 MobiDBLite consensus disorder prediction 129 189 - -
Aip06g03048 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03048 Aip-Chr6 125301772 125302652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03048 49 235 AP2-EREBP Transcription Factor Family AT2G44940 50.943 3.02e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip06g03048 AP2 9.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03048 - - gmx:100801129 192.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g02607 10 115260548 115261427 Aip06g03048 06 125301772 125302652 PCT