Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03026 ATGGGTTCTGTGAGTAACACAAATCCATGGGTGGCTCCAAATTCGGTTTTGAAGGACTGTTCCCAAGGGATTTGCAGCATGTATTGTCCTCAATGGTGCTACATCATGTACTCGCCTCCACCACCGTCAATCGTTCTCGGTGACGGTTCAGATGACGATGATTCTTCCTCCGGCTTCCAATTCTCTCCCCTTATAGTCGCAGTGATTGGAATCTTGGCAAGTACTTTCATCTTGGTCACTTACTACACCGTCATCTCAAGGTTCTGCAGGAACAGAGGAAGAGTTAACGATCAAGCAAATCATAGCAATGATGATACTGTTAATAACAATGAACCTTCTCAGGTTGCTGCGACTTCCGGCATGGACGAGGCTCAGATCAAATCGATAACCGTCTGTAAGTACATCAAGAACGGTGGGTTGGTTGAGGGAAGTGACTGTTCCGTTTGTTTATCAGAGTTTCAAGAGAATGAGAGTTTGAGATTGTTGCCCAAATGTAACCACGCTTTTCATCTTCCTTGTATTGATACTTGGCTTAAATCACAAGCTAGTTGTCCCTTGTGCCGCTCCAATATTGTTTTCTCTAATAATAACTCCAATCCGAGTCACTCTGACTCGGCATTGACACAGATTCCACATCCGCCACCGGCAACTGTCAGTGTCAATTCCTTGGAATATCAGCAGAGGAGTGATGATGTTGTTGCAATAATTGTTCAGAGTTCACAGCATCAGCAAGTTGTGGTTGATTTTGGTAGTCAAGTCCAGGAGAACAAAGTGAATCTGTAA 783 0.4419 MGSVSNTNPWVAPNSVLKDCSQGICSMYCPQWCYIMYSPPPPSIVLGDGSDDDDSSSGFQFSPLIVAVIGILASTFILVTYYTVISRFCRNRGRVNDQANHSNDDTVNNNEPSQVAATSGMDEAQIKSITVCKYIKNGGLVEGSDCSVCLSEFQENESLRLLPKCNHAFHLPCIDTWLKSQASCPLCRSNIVFSNNNSNPSHSDSALTQIPHPPPATVSVNSLEYQQRSDDVVAIIVQSSQHQQVVVDFGSQVQENKVNL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03026 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 3 253 - -
Aip06g03026 260 SMART ring_2 146 187 IPR001841 -
Aip06g03026 260 Pfam Ring finger domain 145 188 IPR001841 -
Aip06g03026 260 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Aip06g03026 260 CDD RING-H2_PA-TM-RING 145 188 - -
Aip06g03026 260 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 253 IPR044675 -
Aip06g03026 260 SUPERFAMILY RING/U-box 140 198 - -
Aip06g03026 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 197 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03026 Aip-Chr6 124902844 124903739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03026 1 195 C3H Transcription Factor Family AT3G03550 52.113 8.04e-67 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03026 - - adu:107495094 501.901