Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03018 ATGGCTTCTAAACTTTACAAAGATGCCTCCAATGGTGATGAGGCAACAACAAAGCCTGTTCACTTCTTCAAGATCCTGCTCCCGAGGACCATTTTAGATGGAAAAATTATGATTCCTAGAAAGTTTGTAAGGGAATATGGAGAACGCTTGTCCAACAAAGTTGTTCTAAAGCTTCCAAATGGCACAAAATGGGAGGTATATTTGGAGAAACATGATGGAAGAATTTGGTTACAAAATGGTTGGAAAGAGTTTGTGGAGCATCACTCTCTACGGTTTGGGGATCTATTGGTTTTTAGATTTGATGGAACATCTCATTTTAATGTGTTCATATGTGATATGAGTGCCACGGAAATAGACTACCCCTTCAAGAATAAATATGGTAAAAGGGCCAACACTAGTGATGAGGAACTTCTTCCTCGTAAAACCAAGAGAACAAATGCAAACAACAAAGATGGGGGTAAGTTGAAGAATCCAAGGGAAGGAAAGATGTCCAATGACTTGCTTTCTAAAACTAAGCCATCGGGTTTTGGAAAATTTGAAACTACAGAAGTTGCGAAAAATACTTCCTTCACGGTTATGATAAAACCAAACAGAGGATTATATCGCATGTGGTTACCGATGGGGTTCTTAAAGGATTATATCAAACCTGGGAAGCAAACTGTTACATTGTTGGTTGGAGAAAGATCTTCAAAGGTTAGGTTGATCTATTACCAAAAACATTCTACCAGTTGCCTTACAGCAGGTTGGACAAGATTTGCAAGGGAATCTGATTTGGAAATAGGTGATGCATGTTCCTTTGAATTACTAGCTAGCGATTGTGAAGACATAGTCATGAAGGTTTCCATTTTTAAGCACTCCACTACTGAGCCATAA 873 0.386 MASKLYKDASNGDEATTKPVHFFKILLPRTILDGKIMIPRKFVREYGERLSNKVVLKLPNGTKWEVYLEKHDGRIWLQNGWKEFVEHHSLRFGDLLVFRFDGTSHFNVFICDMSATEIDYPFKNKYGKRANTSDEELLPRKTKRTNANNKDGGKLKNPREGKMSNDLLSKTKPSGFGKFETTEVAKNTSFTVMIKPNRGLYRMWLPMGFLKDYIKPGKQTVTLLVGERSSKVRLIYYQKHSTSCLTAGWTRFARESDLEIGDACSFELLASDCEDIVMKVSIFKHSTTEP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03018 290 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Aip06g03018 290 MobiDBLite consensus disorder prediction 131 166 - -
Aip06g03018 290 CDD B3_DNA 190 284 IPR003340 GO:0003677
Aip06g03018 290 Gene3D - 14 115 IPR015300 -
Aip06g03018 290 SMART B3_2 22 114 IPR003340 GO:0003677
Aip06g03018 290 SMART B3_2 189 286 IPR003340 GO:0003677
Aip06g03018 290 CDD B3_DNA 21 112 IPR003340 GO:0003677
Aip06g03018 290 PANTHER B3 DOMAIN-CONTAINING 186 284 - -
Aip06g03018 290 PANTHER B3 DOMAIN-CONTAINING 16 124 - -
Aip06g03018 290 Gene3D - 177 287 IPR015300 -
Aip06g03018 290 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Aip06g03018 290 MobiDBLite consensus disorder prediction 131 167 - -
Aip06g03018 290 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 186 284 - -
Aip06g03018 290 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 16 124 - -
Aip06g03018 290 Pfam B3 DNA binding domain 190 285 IPR003340 GO:0003677
Aip06g03018 290 Pfam B3 DNA binding domain 22 111 IPR003340 GO:0003677
Aip06g03018 290 SUPERFAMILY DNA-binding pseudobarrel domain 186 285 IPR015300 -
Aip06g03018 290 ProSiteProfiles B3 DNA-binding domain profile. 188 286 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03018 Aip-Chr6 124689116 124692054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03018 22 284 B3 DNA Binding Superfamily AT3G18990 27.164 4.39e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip06g03018 B3 4.9e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03018 - - aprc:113849508 277.715