Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03009 ATGGGTGTCCACGGTCTCTGGGAACTACTCGCCCCCGTCGGCCGCCGCGTCTCCGTCGAGACCCTCGCCGGAAAAACCCTTGCAGTCGATGCGAGCATATGGATGGTGCAATTTATGAAGGCGATGCGCGATGAGAAGGGCGAAATGGTTCGAAACGCTCACTTGCTGGGCTTCTTTCGTCGAATTTGCAAGCTCTTGTTCCTCAGGACAAAGCCAGTGTTTGTCTTCGACGGCGGAACCCCCGCCCTAAAGCGCCGCACCGTCATCGCCCGCCGCAGGCAGCGTGAGAACGCCCAGGCCAAAGTCCGCAAGACTGCAGAGAAATTACTTCTCAATCACTTAAAGGCATTGAGGTTGAAAGAAGTTGCTGATGACATTAAGAACCAGAGGCTGCAGCAGAAGAGTGATGCCAAGGGATGCAAAAAACCTGATCGGATGGACTTTGTCGATAGTGATCCAGGAAAAAGTAACATGAAAGAGATAAATGAAATGTCTTCAGCTAAACTTGCAGCTACAGAGGCAGGAAATTTCTTGCAAGAAGTTGTGTCAAGAAGTCGCAACCAGGAGGAACTTGATGAAATGTTGGCAGCATCTATATCTGCAGAGGAGAATGGAATGCTAGCCGGGAAAGAAGTGCCATCTACTGTACCTAATACTTCAGAGGAGAAATTTGACACAGATGGAGAAATGATACTGCCTTGTGACAATGAAGTAGATTTAGCTGTTTTAGCTGCTTTACCAGAGTCAATGCAACTTGATATTCTTGCACAGCTTAAAGGAAAGAAAACAAAAGCACCAGTGGAAGATGAACTGCAGAACCAATGTGAGGTCAATGATAGGGGCAAGGGTAAGGGGATTCTGTTCAGAGAAAGTGACTTGGGTGGTTGTAGCTCAAAATGTGACAATGTGATATCAACAAATGACAATCAAGACAAAATTGATGAAATGTTAGCAGCCTCTGTTGCTGCGGAGGGAATTGCAAAGTCTATGAGTAATGCATCAACTTTTTTTGGGGCTTCAGCCATTGAGGAAGAGGATGGTGACTATGATGAAGATGAAGAGATGATACTGCCTGCAATGCATGGTGGAGTTGATCCAGCTGTTCTGGCCTCTTTACCTCCATCAATGCAACTGGATCTCCTAGTTCAGATAAGAGAGCGATTAATTGCAGAGAATCGACAAAAGTATCAAAAAGTAAAGAAGGATCCTGCAAAATTTTCTGAGCTACAAATAGAAGCTTACCTTAAAACAGTTGCTTTTCGACGAGAGATAGACGAAGTGCAAAAAGCTGCTGCTGGAAGAGGAGTAGGGGGTATCCAAACTTCACGGATTGCATCTGAAGCCAACAGGGAGTACATATTCTCATCATCTTTTACTGGTGACAAACAAGAACTTGCATCAAGCAGATCAGAGAAAAATGATGATGCTCATCGAAAGGCTCAAGGAACACATCCTGTGGAGAACCTTGCTAATATTATTGCATCAGCTGGTTCTAATACTACAAGTGGATTGGTTTGCAATGAACCTAGTGAATCTGTTGATGAAAGAATTCAGACCTTCCTAGATGAGAGGGGTCAATTTCGAGTTAGCAGATCAAGAGCTATGGGGATGCGTATGACCCGAGATTTGCAAAGAAATTTGGACTTGATGAAGGAGATTGAGCTGGAAAGAACACACATCAACAAGGCTTCAAATATTGATGCAATTTTGAGTGCAGAGAATAATGGTCCATCAAAAAGTTCTGGGACCAATTCTGTTGGTAAATTAAAAACTATGAATGTTGATCTAGTTGGTGAGTGTGTGCAAAATGAGCAAGTGCAAAATGAGCAATCTGTCTTTGACAAGGATACTTCTATAGAGGTATCCTTTGAATATGATAGCAAGAATGCACTCATTGATGCTGAAGATGAAATATTTGCTAATTTAGTAGGAGGAAATTCAGGGACAGTATTTCATGCTGATGGTATTCCAGCAAAAGAACAACCTTCTAATTCAGATTCAGATTGTGACTGGGAAGAAGGAATTGTTGAAGGGAAGAGTACCTTCATTCCTGGAAATAATAAAGTGGAATGGAATTCTTCTGTTGCTGAAGGGGATAATAATGATGAGAGTGAAGTAGAATGGGAGGAAGGAGATTGTGATGGTGATAAAAGTACCATATGTTGCCCATCTGAGTCTGGGAAAAAGCCAACTCGAGGTCAATTGGAGGAGGAGTCTAATTTGCAGGAAGCAATTAGGAGAAGTCTTGAGACTATAGGAGATGGAGAGCTTAAGCACCTATCATCTGTAGATGAGCATTCAAATGCTGATGAGAAAAAATTGGATTATGGATTAACCCATGGTGATTATTTGGATGTTTCTGGTGCAATGAATTTAAATGGTGAAGATGCATTTGTGAAGATAAAAAATAGTATGGCTGTTTCATCTTCTCCTAGGGAAGATGGTTCTAAACAAAATATATTTCATGGAAATGTGGATGGCGATGGTTATGTCAACTCCCAAACTTCTGATTTTCCTAGGGTTGCAAATATGATGAAGGACAATGACCATATGGCTGCAGAACAATTGTTGGATAAACATTGTGATGATACTAAGATGTCTTCCGATGGCAAAAATGTTTCCAAGGATAATCCACTTGGTTCCACTGGTAAGGAGAAACCTAACTATAATAATGAATCTCAGCCATTGATTAATTCTGATGATAATACCAAGTTTGCCACTCCTTTGACAGAATCATCCTTGAAGGGATCAACAGAAAATGTTGATATTGGGCCAAAGTTAGCTGCAGTGGACAATGATGGAAGTTTCAGAGGAGAAAGAAATATTGATCTTGTGAAAAATGCAGTTAACACCTCAGGAGATTTTCCAGCACATGTAGATGAGGTTAGATTGGAGGAGGAAATGCGAATACTTGGTCAAGAATATATAAACCTTGAAAATGAGCAGAAGAAACTTGAAAGAAATGCAGAATCTGTGAACAGTGAATTGTTCACAGAATGTCAGGAATTACTGCAAATGTTTGGATTGCCATATATTATTGCCCCAATGGAAGCTGAGGCACAGTGTGCTTTCTTGGAAACTACAAAACTGGTTGATGGTGTTATAACTGATGATTCTGATGTCCTTCTATTTGGAGCTCGTAATGTTTACAAGAATATATTTGATGACCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAGAAGGAACTTGGATTGAGCAGGGAAAAATTAGTACGCATGGCACTACTACTTGGGAGTGATTATACTGAAGGTGTAAGTGGCATTGGGATTGTCAATGCTATTGAGGTTGTGAATGCGTTCCCTGAGAAAGATGGCTTCTTGAAATTCCGCCAGTGGGTTGAGTCACCAGATCCCACCATTCTTGGATGGTTGAATACAAAAGGTGGATCAAATACAAGAAAGAAAGGATCAAAAGAGCCTTCGTCGGATCAAATTAATAGTCATATTAAGGAACAAGAGGATTCGCTGGATTATGACCAAGAAATCAAGCAAACATTTTTTGAGAAACATAGAAATGTTAGCAAGAATTGGCATATTCCATCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTATTATTCTCCACAAGTTGACAAGTCAACCGAGCCTTTCACCTGGGGAAAGCCAGATCATCTTGTTCTTCGAAAATTGTGCTGGGAGAAATTTGGGTGGACTAGCCAGAAAGCAGATGAATTACTATTACCTTTGAACCTTTTAATACAGACTCAACTGCGTTTGGAAGCGTTTTATAGTTTCAATGAACGATTTGCAAAAATTCGAAGCAAGAGAATTAAGAAAGCTGTAAAAGGGATTACTGGTAAGCAGCCTTCAGAATTGAAAGATGATTTCAACAGTGGCAAGAGTAGGAGAGGAAATCATCTAGAATCTGAGGACAAAAATTTTGAGAATCTAAAGGGGACAAAGGAAAGTCTTGAAAGTTTGAAGAAACCTAAAGTGAAACAATCAAGGAAAAGGAAGAATGACGGGGACACTCTTGGGAAGGCAATGTCAAAGAGAAAGACAATCACTGATGGTCCTTCAGCTTCTGCTATGTCTGCAGTGGAGAATATACAGCCAGGTACTGAGTCTGAAAAAGACCAAAGTGATAGTAATCCATTGATTTCAAATAGAAGTGGGAGGGGCAGAGGAAGAGGCAGAAGTTTGGCAGTAAAACATGGAAGGAAAAAGGAAAGTCTCATTTATCAATCATCTGAAACATCATCTTCTAGTAGCGACACTGATGATCATGTTGATATGTCAAAAGTTCCTCAAGAGGTTCGAAGGTCCTCACGTTCCAGAAAACCTGTCAGTTATTCACTTGAGAACCTAGAAGATGAAGAACTCAATGAGTCATTTGATACGAGGAATCAATCATCCTTGTGTGAAGATCCATTAGAAGAAAATTTATCTGATATTCCTGGTGCATGTGGGGATTCTGCAACTGGTTTAAGCAGAGGTAAAGAGAGTGATATGATAAGTAGTGCTCCAACCAGGAACTTCCCTAGAGACGATCTTGGGTGGGAAGGTCAAATTTTCACAGATGCTGATGAAACTACTCATCCAGATCCAGGAATTGGTGATGGTGATATTACTGTTAATGCTGACTCTTGTGATGACTACCTTAAACTAGGAGGTGGTTTTTGTTTAGATGATAGTGATGAACCTAGCAATCAGAATGCAGTTGATGGTGTCAATACTGCTGATACTGAAGGATTTCTGCACTGTTCTGTTATGATGGATGAGACTGACCATCATAAAAATGGTTCTGAGATATTATTTTCTGGCACCGATAAAGCTCCCAGCGAGATGCAAGAGGGACGCAATGCCTACAATGTTGACAACGAGCCAAATGATAACCTTCCAAATGTTAGTGCCAATGATCAAAATGAAATGGGGGTCTCTGTACCTGAGAATGTTAATCATAATAATGGAAACTACAATGGGGCATTTAGTGCAATGCCATTTTTGAGGAAAAGAAGGAAGAAGTAG 5016 0.4075 MGVHGLWELLAPVGRRVSVETLAGKTLAVDASIWMVQFMKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKALRLKEVADDIKNQRLQQKSDAKGCKKPDRMDFVDSDPGKSNMKEINEMSSAKLAATEAGNFLQEVVSRSRNQEELDEMLAASISAEENGMLAGKEVPSTVPNTSEEKFDTDGEMILPCDNEVDLAVLAALPESMQLDILAQLKGKKTKAPVEDELQNQCEVNDRGKGKGILFRESDLGGCSSKCDNVISTNDNQDKIDEMLAASVAAEGIAKSMSNASTFFGASAIEEEDGDYDEDEEMILPAMHGGVDPAVLASLPPSMQLDLLVQIRERLIAENRQKYQKVKKDPAKFSELQIEAYLKTVAFRREIDEVQKAAAGRGVGGIQTSRIASEANREYIFSSSFTGDKQELASSRSEKNDDAHRKAQGTHPVENLANIIASAGSNTTSGLVCNEPSESVDERIQTFLDERGQFRVSRSRAMGMRMTRDLQRNLDLMKEIELERTHINKASNIDAILSAENNGPSKSSGTNSVGKLKTMNVDLVGECVQNEQVQNEQSVFDKDTSIEVSFEYDSKNALIDAEDEIFANLVGGNSGTVFHADGIPAKEQPSNSDSDCDWEEGIVEGKSTFIPGNNKVEWNSSVAEGDNNDESEVEWEEGDCDGDKSTICCPSESGKKPTRGQLEEESNLQEAIRRSLETIGDGELKHLSSVDEHSNADEKKLDYGLTHGDYLDVSGAMNLNGEDAFVKIKNSMAVSSSPREDGSKQNIFHGNVDGDGYVNSQTSDFPRVANMMKDNDHMAAEQLLDKHCDDTKMSSDGKNVSKDNPLGSTGKEKPNYNNESQPLINSDDNTKFATPLTESSLKGSTENVDIGPKLAAVDNDGSFRGERNIDLVKNAVNTSGDFPAHVDEVRLEEEMRILGQEYINLENEQKKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAFLETTKLVDGVITDDSDVLLFGARNVYKNIFDDRKYVETYFMEDIEKELGLSREKLVRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEKDGFLKFRQWVESPDPTILGWLNTKGGSNTRKKGSKEPSSDQINSHIKEQEDSLDYDQEIKQTFFEKHRNVSKNWHIPSSFPSETVISAYYSPQVDKSTEPFTWGKPDHLVLRKLCWEKFGWTSQKADELLLPLNLLIQTQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKQPSELKDDFNSGKSRRGNHLESEDKNFENLKGTKESLESLKKPKVKQSRKRKNDGDTLGKAMSKRKTITDGPSASAMSAVENIQPGTESEKDQSDSNPLISNRSGRGRGRGRSLAVKHGRKKESLIYQSSETSSSSSDTDDHVDMSKVPQEVRRSSRSRKPVSYSLENLEDEELNESFDTRNQSSLCEDPLEENLSDIPGACGDSATGLSRGKESDMISSAPTRNFPRDDLGWEGQIFTDADETTHPDPGIGDGDITVNADSCDDYLKLGGGFCLDDSDEPSNQNAVDGVNTADTEGFLHCSVMMDETDHHKNGSEILFSGTDKAPSEMQEGRNAYNVDNEPNDNLPNVSANDQNEMGVSVPENVNHNNGNYNGAFSAMPFLRKRRKK 1671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03009 1671 MobiDBLite consensus disorder prediction 1133 1159 - -
Aip06g03009 1671 Coils Coil 961 995 - -
Aip06g03009 1671 MobiDBLite consensus disorder prediction 871 919 - -
Aip06g03009 1671 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Aip06g03009 1671 MobiDBLite consensus disorder prediction 1351 1386 - -
Aip06g03009 1671 MobiDBLite consensus disorder prediction 1277 1515 - -
Aip06g03009 1671 MobiDBLite consensus disorder prediction 1420 1450 - -
Aip06g03009 1671 MobiDBLite consensus disorder prediction 862 920 - -
Aip06g03009 1671 SMART xpgineu 1005 1074 IPR006086 GO:0004518
Aip06g03009 1671 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Aip06g03009 1671 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Aip06g03009 1671 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Aip06g03009 1671 MobiDBLite consensus disorder prediction 465 482 - -
Aip06g03009 1671 Gene3D - 1 142 - -
Aip06g03009 1671 MobiDBLite consensus disorder prediction 463 484 - -
Aip06g03009 1671 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 651 668 IPR006084 -
Aip06g03009 1671 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Aip06g03009 1671 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Aip06g03009 1671 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1074 1265 IPR036279 -
Aip06g03009 1671 MobiDBLite consensus disorder prediction 1141 1159 - -
Aip06g03009 1671 SUPERFAMILY PIN domain-like 2 1089 IPR029060 -
Aip06g03009 1671 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 287 1671 - -
Aip06g03009 1671 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 263 - -
Aip06g03009 1671 Pfam XPG I-region 1008 1089 IPR006086 GO:0004518
Aip06g03009 1671 MobiDBLite consensus disorder prediction 685 699 - -
Aip06g03009 1671 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 287 1671 - -
Aip06g03009 1671 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 1 263 - -
Aip06g03009 1671 ProSitePatterns XPG protein signature 2. 1008 1022 IPR019974 GO:0016788
Aip06g03009 1671 Gene3D - 1074 1128 - -
Aip06g03009 1671 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Aip06g03009 1671 MobiDBLite consensus disorder prediction 680 742 - -
Aip06g03009 1671 CDD PIN_XPG_RAD2 991 1075 - -
Aip06g03009 1671 SMART HhH_4 1076 1109 IPR008918 GO:0003677|GO:0003824
Aip06g03009 1671 MobiDBLite consensus disorder prediction 130 156 - -
Aip06g03009 1671 Pfam Ubiquitin binding region 363 387 IPR025527 -
Aip06g03009 1671 Pfam Ubiquitin binding region 235 257 IPR025527 -
Aip06g03009 1671 Gene3D - 957 1073 - -
Aip06g03009 1671 Coils Coil 1303 1323 - -
Aip06g03009 1671 CDD H3TH_XPG 1077 1208 - -
Aip06g03009 1671 SMART xpgn3 1 98 IPR006085 GO:0004518
Aip06g03009 1671 CDD PIN_XPG_RAD2 2 92 - -
Aip06g03009 1671 MobiDBLite consensus disorder prediction 1289 1346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03009 Aip-Chr6 124508214 124520201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03009 999 1106 Core DNA Replication Machinery Family AT5G26680 35.135 1.60e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03009 K10846 - gmx:100820295 1922.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03009 06 124508214 124520201 Aip06g03009 06 124508214 124520201 ECH