Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03007 ATGAGCGGGAGGATGAATAAGTGGTCCCATTTGAAGATGGCTTGGATTGAACACTCCCAGATCAACCGAAAAGACGGTTACATAACAAACCCACCTCCTCTTGTTTCAACATCCCCATATTCTGGAACTTTCCAGAAAGAACCTTCTGCTTCAACAACACCCTCACCTTCCACATCCGGTGCTAAATTCAGTCCTGCTGTGCTCTTCATCATAGTGATTCTAGCTGTTCTTTTCTTCATCTCCGGTCTCCTTCACCTTCTTGTTAGGTTTCTCGTTAAAAACCCTTCATCTTCCTCTGCATCTGCTCAACCTAATCGGCACCATGAAGGTTCTCTCTCTGACACTCTTCAGAGGCAGCTTCAGCAGCTTTTCCATCTCCATGACTCTGGTCTTGACCAGGCTTTCATCGATGCGCTTCCTGTTTTCCAGTACAAGGAGATCAAGGGGCCGAAGGAACCTTTCGACTGCGCCGTTTGCCTCTGCGAGTTCTCCGACAAGGATAAGCTCCGGTTGCTCCCTGTGTGCAGCCATGCCTTCCACATCAGCTGTATAGACACATGGCTTCTCTCGAATTCCACTTGCCCACTCTGTAGAGGAACACTCTTCGCGCCGGGGTTTTCCATGGAGAATCCGGTGTTTGATTTCAATGATTTGAGGGAAGATGAGGGCTGCCAGTTCCCCTGTAGTAACAATAACAATGGAGGGAAGATGGTTGCAGTTCAAGAGACTGAAGAAGCTGCGGACAAGGGGCTTGTCGCTGTGAGGCTTGGTAAATTTAGGAGGGTTGATTTGGAGGCGGCCGAGCCGGAAGGTGGAGAGGCTAGTAGTAGTAATTTGGATGCAAGAAGATGTTTCTCAATGGGGTCTTACCAGTATGTACTTGGAAAATCGGATCTCCGGATAACCTTGAATTGTGATCATCGCCGGCAGGGTCGCGGCGATGATAATTCCGAGGAGGGATCAGTTGAGGTTGAGAGGGAAGGAAAGAACATTACTAGTGTTAGCAGAGGAGAGAGCTATTCTGTTTCCAAAATATGGTTGTGGTCAAAGAAGGGAAAATTTTCAGTTTCTTCAGATGCACACAACATTGGATTACCATCTTCTCTTAATTCAGATTTGCCTTGGATGAGAGAAATGGAAGGTACATCAGAAAAGGTATAA 1161 0.4711 MSGRMNKWSHLKMAWIEHSQINRKDGYITNPPPLVSTSPYSGTFQKEPSASTTPSPSTSGAKFSPAVLFIIVILAVLFFISGLLHLLVRFLVKNPSSSSASAQPNRHHEGSLSDTLQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIKGPKEPFDCAVCLCEFSDKDKLRLLPVCSHAFHISCIDTWLLSNSTCPLCRGTLFAPGFSMENPVFDFNDLREDEGCQFPCSNNNNGGKMVAVQETEEAADKGLVAVRLGKFRRVDLEAAEPEGGEASSSNLDARRCFSMGSYQYVLGKSDLRITLNCDHRRQGRGDDNSEEGSVEVEREGKNITSVSRGESYSVSKIWLWSKKGKFSVSSDAHNIGLPSSLNSDLPWMREMEGTSEKV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03007 386 Pfam Ring finger domain 155 198 IPR001841 -
Aip06g03007 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 203 IPR013083 -
Aip06g03007 386 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Aip06g03007 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 20 364 - -
Aip06g03007 386 SMART ring_2 156 197 IPR001841 -
Aip06g03007 386 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 20 364 - -
Aip06g03007 386 CDD RING-H2_PA-TM-RING 155 198 - -
Aip06g03007 386 MobiDBLite consensus disorder prediction 307 330 - -
Aip06g03007 386 SUPERFAMILY RING/U-box 135 204 - -
Aip06g03007 386 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03007 Aip-Chr6 124475829 124477712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03007 82 353 C3H Transcription Factor Family AT2G18650 40.968 8.05e-56 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03007 - - tcc:18600728 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03007 06 124475829 124477712 Aip06g03007 06 124475829 124477712 ECH