Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03000 ATGGTGATCGTTAATGGTGTTGCTAGCAGAACAAGAAGCAAGAAGAAAGAGAGGTCTTTGAATCCGTCACCGTGTATTGGATCAGGATCCCGAACATTGTCTTCGTCGTCATCAAAGTCCAGCGAGAGAAAGAAGGGGAAAAGAAAGGCTGAAGTTGATGTTGAGGTTGTGGAATTTGACTATGAGGCTTTCCATGAACGATGGATGATGGAACCTCAGCAACCTCTTGAGATGCCTCCGCCAAGAGACGTGATTGAACTCAGCGATGATAGTGATGATAATGCAGCTGCTGAGGGGTTGCAGAAGCTTCATCGTGGGTATGTTAATGAAGAGAAGAAGGAAGAAGTTCAAGAAAGAAACGTGTTTCCTATTGATGGTGCTGGAACTTCTGCCAACGATCCTATAATCGTTGGTTTGAGTGATAGTAGTAGTAGTGATGAAGGAAGTGAGGGCGGTGGAAGAAGTTTGGACTGGGATTTTGGATTATCAAGTGAGTCAGAGGACACTGATAACAGTGATGACGAAGATTTCAGAGTGGAGGATGAGGGAGAAGGTTCAGCTTCAGCATCAGCTTCAGCATCAACTTCAGCTTCAAGCAGTGATGATAGTGGTTCAAGTTCCTTTGATGATGAGGATGAAGAGGAGGAAAAGGAGAAGAGGAGATGTAAGAGGAGGAAGAAGGAGAAGAAGAGAAGAGAGCCAACTTTTGAGTCTCATAGCAATAAAGTTTTGCGCTGCGACGAGGTGATTGTGGAAACTGAATGCTCTGGAATTTGCAAGAAGAATGGTGAGAATAAGAATAATTCATCCTCAACCGAGAATAATGTGTTTGATCATCAGCCAGAGAAAATGCTACCAAAGGATGCAGATTGTGCTAGTGTTCTCTTTGGAGAACGCAATACGGAGGGTTGTTCTTCAGAAAAGAATGAAGATAAGGAAAAGAATGTAGCCAAGAAACCGGTGGAGGTTTGTTCTTCAAAAAAGAATGAAGATAAGGAAGAGAATGTAGCTAAGAAACCAGTGGAGGGTTGTTCTTCAAAAAAGAATGCAGATTGTGCTAGTGTTCTCTTTGGAGATCGCAATACGGAGGGTTGTTCTTCAGAAAAGAATGAAGATAAGGAAGCCAAGAAACCAGCGGAGGGTTGTTCTTCAAAAAAGAATGAAGATAAGGAAAAGAATGTAGCTAAGAAACCAGTGGAGGGTTGTTCTTCAAAAAATAATGAAGATAAGGAAAAGAATGTGGCTAAGAAACCAGTGGAGGGTTGTTCTTCAAAGAAGAACGAAGACAAAGGAAAGAAGGTGGCAAAGAAACCAATGCCGGCGGGGAATAGAGCACGGAAGAGAGTGGAAAGAACAGGAGAAAATGTTGGTGCTGATATTGAAGCCTCTTCCCAAAAGCGTTCGCGTCCATCCACACCTGAGGAGAATGATTCAGAAAAGGATGAAAAGAAACCGGTAAAACAGAAGGGTCGTGAAAGTGTGTCTGATTTTGTGGCAAAGGACAAAGGGGACTCGCCAATGATCGATGAAAGAGTGCCGATGAATGATGAAAGAATGGAGAGTGCAGAGGAAGAGAGGGAGAACAAGAAGGAAGGAGAGGCTGAAGGGAAGCATAAGGCCGGGGCGGTTTGCGAAAGTAGTTACAAAGAGAGGGAGCAACATAGAGTGACAACAAATCCATCTAGGCCAAAGGAGGCACCGTTGATTGAACTTCTTGCTGAATGCTTTCGGATTAAGCATAATCCAGATAATGTTCATAAGCAAGATACAATCTCAAAGGAACCAGCTCTCGATGTTCAGAGAAAATTTTTTTTTGGAAAGAAAGTGCCAATTGAAAAAACTGAATCCGAGAAGGAGAGGGATATGTTGTGGGAAGAAATGGATTCTTTGCTCAGACTAGGTGAAGTTGACTCCTTGACTGTCGAAACGCAACAGAACACAGAGGCTCCGGCAACCAATTGTAAGCACAAGTTTGTCCATGATGAAGAGACTGGAATATATTGCATACTCTGCCATTGGATGATCATAGACATAAAAGGCATGCCGGTACCCTTTGTGAGTGAGTATCCAAGAGAAGGATCAAGAAAGAAGCTGCTATCTGATGGGCCTAATGGCTTATGCTTTGATGATGCTCCATTCGGTGTCCGAGAAGGTGGTTACTGTAACAAGGAAGGCACAGTTTGGGACCTGATTCCAGCAGATACTAAGCAAAACCTGTATGCTCATCAGCTTGAAGGTTTTGAATTCCTTTGGAAAAACTTGGCAGGAACCATGGAGCTTCCTAAATTGAAGAGTTGTGACTCGAACAGCACGGGTGGATGCATCATTTCTCATGCTCCAGGGACTGGAAAGACGCGGCTGACCATCGTGTTCCTTCAGACATACTTGAAAGTGTTTCCAGATTGCCATCCCATGATTATTGCTCCTGCTAGCTTACTGCTAACTTGGGAAGATGAGTTCAGAAAGTGGGACAATGAGATTCCGTTCCATAATTTGAGCAATCAAGACACATCAGGAAAAGAGCACCGAGCTGCATGGAGCAAAGTTGGAGGGTCTGCTCCAAGCCAGGAAGATATCCGGATGGTGAAGCTGTATTCTTGGTTCAAAGAACCAAGTATTCTTGGAATCAGCTACAGTCTATTTCAGAGGCTTACCGGCTTGAAGCGTGATAAAAGCTTGAAGGAGAATGCTGCCAGAGGGGTCATGGGAAAAATCCTTCTTGAAGTTCCTGGATTGTTGGTATTGGATGAAGGACACACGCCACGAAATCAGAGTAGTCAGATTTGGAAGGTTCTTTCTGAGATTCAAACTCACAAGAGAATCATCCTTTCCGGGACTCCTTTCCAGAACAATTTTCTGGAGCTTTACAATACAATCTGCGTGGTCAGACCGTCCTTTCCGGATACCATACCTCCTGAGCTTAAAAAGTTCTGCCAAAGAAGATTGATGCAAGAGAAGAAAGAATCTAAAGGTCTCAGTTGGGAACCAGTTTCTTCAGTCAGAACTGAGAATCTAAATGATGAGAACATCAAGCAGTTGAAGCAGCTGATGGATCCATTTGTGCATGTTCACAAAGGCAGTATTCTTCAGAAGAATCTTCCTGGCTTGAAAGACTGCGTGGTGACTTTAATGCCAGGTGATTTGCAGAAAACACTTCTTGAGGGCATTGAAGGACATCCAAATACATTGCCTTTTGATAGCAAGTCGGCCTTGGTGTCTGTCCATCCATCCCTTTTCCTTTGCTGCACTCTTTCACCTAAGGAAAGAGCTCTTGTTGACATGGAACAGTTGAAAGACCTCAAACTGAATCCAACTGTTGGTGTCAAAACAAGATTTTTGGTGGAGTTTGTAAGGATCTGTGATGCAATGAACGAGAAAGTGCTTGTGTTCAGCCAGTTCCTTGATCCTTTGACTTTAATCATGGAGCAATTAAAGTCAATTTTCAATTGGACTGAGAAAAAAGAAGTTTTCTACATGAGTGGAAAGCTGGATAAGAACCAAAGGCAGTTACTCATTCATTCCTTCAATGATCCAAACAGCCAAGCAAAGATCTTGCTTGCATCCACAAAAGCTTGCTGTGAAGGAATCAGTCTGGTTGGTGCTTCCAGGGTGGTGCTGCTGGATGTGGTTTGGAACCCCTCGGTCGAAAGGCAAGCTATCAGCCGTGCTTATAGGCTGGGGCAAAAGAAGGTGGTCTACACTTACCATCTCATAACACATGGGACCACCGAGTATACAAAATACTGCCATCAGGCCAAGAAGGACCGGTTGTCTGAACTAGTCTTTTCAGCAAAGAACACTGAACAGGATGAGCCCAAGAGTTCTGCCGTGGAATTCGAGGATGAAATTCTCGATAACATGCTTAAGTTGAGAGTTTCCAGTACTGAAGAGTGCAGCCATTGTGAACAAGTTGTCACGGAGGAATAG 3927 0.4367 MVIVNGVASRTRSKKKERSLNPSPCIGSGSRTLSSSSSKSSERKKGKRKAEVDVEVVEFDYEAFHERWMMEPQQPLEMPPPRDVIELSDDSDDNAAAEGLQKLHRGYVNEEKKEEVQERNVFPIDGAGTSANDPIIVGLSDSSSSDEGSEGGGRSLDWDFGLSSESEDTDNSDDEDFRVEDEGEGSASASASASTSASSSDDSGSSSFDDEDEEEEKEKRRCKRRKKEKKRREPTFESHSNKVLRCDEVIVETECSGICKKNGENKNNSSSTENNVFDHQPEKMLPKDADCASVLFGERNTEGCSSEKNEDKEKNVAKKPVEVCSSKKNEDKEENVAKKPVEGCSSKKNADCASVLFGDRNTEGCSSEKNEDKEAKKPAEGCSSKKNEDKEKNVAKKPVEGCSSKNNEDKEKNVAKKPVEGCSSKKNEDKGKKVAKKPMPAGNRARKRVERTGENVGADIEASSQKRSRPSTPEENDSEKDEKKPVKQKGRESVSDFVAKDKGDSPMIDERVPMNDERMESAEEERENKKEGEAEGKHKAGAVCESSYKEREQHRVTTNPSRPKEAPLIELLAECFRIKHNPDNVHKQDTISKEPALDVQRKFFFGKKVPIEKTESEKERDMLWEEMDSLLRLGEVDSLTVETQQNTEAPATNCKHKFVHDEETGIYCILCHWMIIDIKGMPVPFVSEYPREGSRKKLLSDGPNGLCFDDAPFGVREGGYCNKEGTVWDLIPADTKQNLYAHQLEGFEFLWKNLAGTMELPKLKSCDSNSTGGCIISHAPGTGKTRLTIVFLQTYLKVFPDCHPMIIAPASLLLTWEDEFRKWDNEIPFHNLSNQDTSGKEHRAAWSKVGGSAPSQEDIRMVKLYSWFKEPSILGISYSLFQRLTGLKRDKSLKENAARGVMGKILLEVPGLLVLDEGHTPRNQSSQIWKVLSEIQTHKRIILSGTPFQNNFLELYNTICVVRPSFPDTIPPELKKFCQRRLMQEKKESKGLSWEPVSSVRTENLNDENIKQLKQLMDPFVHVHKGSILQKNLPGLKDCVVTLMPGDLQKTLLEGIEGHPNTLPFDSKSALVSVHPSLFLCCTLSPKERALVDMEQLKDLKLNPTVGVKTRFLVEFVRICDAMNEKVLVFSQFLDPLTLIMEQLKSIFNWTEKKEVFYMSGKLDKNQRQLLIHSFNDPNSQAKILLASTKACCEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITHGTTEYTKYCHQAKKDRLSELVFSAKNTEQDEPKSSAVEFEDEILDNMLKLRVSSTEECSHCEQVVTEE 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03000 1308 MobiDBLite consensus disorder prediction 163 181 - -
Aip06g03000 1308 MobiDBLite consensus disorder prediction 187 204 - -
Aip06g03000 1308 MobiDBLite consensus disorder prediction 259 286 - -
Aip06g03000 1308 Coils Coil 212 233 - -
Aip06g03000 1308 CDD DEXHc_ATRX-like 739 970 - -
Aip06g03000 1308 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1112 1268 IPR001650 -
Aip06g03000 1308 MobiDBLite consensus disorder prediction 1 51 - -
Aip06g03000 1308 MobiDBLite consensus disorder prediction 23 37 - -
Aip06g03000 1308 MobiDBLite consensus disorder prediction 358 563 - -
Aip06g03000 1308 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 267 1289 - -
Aip06g03000 1308 SMART helicmild6 1138 1227 IPR001650 -
Aip06g03000 1308 MobiDBLite consensus disorder prediction 83 120 - -
Aip06g03000 1308 CDD SF2_C_SNF 1105 1238 - -
Aip06g03000 1308 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 765 965 IPR014001 -
Aip06g03000 1308 SMART ultradead3 735 977 IPR014001 -
Aip06g03000 1308 MobiDBLite consensus disorder prediction 135 150 - -
Aip06g03000 1308 MobiDBLite consensus disorder prediction 468 559 - -
Aip06g03000 1308 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 267 1289 IPR044567 GO:0080188
Aip06g03000 1308 MobiDBLite consensus disorder prediction 260 278 - -
Aip06g03000 1308 MobiDBLite consensus disorder prediction 303 345 - -
Aip06g03000 1308 Pfam SNF2-related domain 760 1043 IPR000330 GO:0005524|GO:0140658
Aip06g03000 1308 Pfam Helicase conserved C-terminal domain 1117 1227 IPR001650 -
Aip06g03000 1308 MobiDBLite consensus disorder prediction 70 243 - -
Aip06g03000 1308 MobiDBLite consensus disorder prediction 364 436 - -
Aip06g03000 1308 Gene3D - 1040 1308 IPR027417 -
Aip06g03000 1308 MobiDBLite consensus disorder prediction 301 346 - -
Aip06g03000 1308 Gene3D - 721 1020 IPR038718 -
Aip06g03000 1308 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 911 1268 IPR027417 -
Aip06g03000 1308 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 725 1020 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03000 Aip-Chr6 124349117 124353939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03000 1125 1257 RAD5 or RAD16-like Gene Family AT5G43530 38.346 1.25e-15 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip06g03000 SNF2_N 5.2e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03000 K10875 - aip:107627890 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03000 06 124349117 124353939 Aip09g00961 09 13276127 13278979 PCT