Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02981 ATGCTCCTACTCCGATTCACCACCAATCCTCATCCTCCACCGCCATTTCTACCCTGCATCACCAACGCCACATCTTCTTCCTTTTGCCCCACGCATCGCTCTTTGTTCAACAACGGAAACAAGAACTGCTTTGTTCGCTCGAATGTCAGGACCCACACTCTTCGTGTTTTCGCAATGTCTGATTCCAAGGCATACAAGATGAACCTCAACCAGTACCTTGTCACTCTCGAAAGGCCCCTCGGCATCCGTTTCGCTCTCACCGCTGACGGCAACATCATCGTCCATTCCCTCACCAAAGGGGGCAATGCAGAGAGGTCGAGGATTATAATGGTAGGTGACACTTTGAAGAAACTTGGGGACTCATCTCAGAACAAGCTCGTCGAGATTAAAGACGTTGGAGACACACAGAAGGTGCTAAATGAGCAAGCAAATTCTTTTAGCTTGGTTCTTGAGAGGCCCACATCACCTTTTCCGATCCAACTACTGCATAAAATGATTGATCTTGAAATATTGTTTAATAGAGGTCGAGTTCCTATTATCTCCTGGAGCAAGACACTATTGGCATCTAATTTACAGCCATCTAGTGAGAGCTCTGGGAATTCTGGATTTGTGGTGTTCAATTCAAAATTTCTTACATTGAAAGGAAGCCAGCTATTGGGCAATCAAAATCAAGATGCCATCACTTATGGCGAAAGAAACTTCATTACTCAACAAACGACTCAACTTGCTTGTATTTTTACTGGAGAAGCCTGTGGAGATGGAGAATGGGCTCATGGAAGTTTCCCACTTGAGGAATATATTCAGGCTCTGGACCGTTCCAAGGATGAGATGTACTATAATCATTCCCTTGGCATGCGCTATAGTAAGATTACAGAGCAACTATTTGTAGGATCATGTATTCAAACAGAAGCTGATGTGGAAACTTTGTCAAATGTTGAGGGAATTACTGCTGTTCTGAACTTCCAAAGTGGAAATGAAGCTGAAAATTGGGGAATAAATGTAAGATCAATCAATGATTCATGTCAAAGGAACAATATTCTCATGATCAACTATTCCATAAGGGATAGAGATTCATATGATTTGAGAAAGAAACTTCCATTTTGTGTGGGGCTACTATTAAGGCTGCTTAGGAAGAATCATCGTGTCTTTGTTACTTGCACTTCTGGATTCGATCGGTCTCCTGCTTGTGTGATTGCATACCTGCACTGGATGACAGATGTTTCCCTTCATGCAGCCTATACTTGGGTCACTGGGATGCACACATGTAGACCCGACAGGCCAGCAATTGCATGGGCAACATGGGATCTTATAGCTATGGTTGAAAGGGGAAAACATGATGGACCTCCCACACATGCTGTCACATTTGTGTGGAATGGTCATGAGGAAGATGATGTAACTTTGGTGGGAGATTTTACTGCAAACTGGAAAGAACCACTAAAGGCAGTGTATCAGGGTGCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAATACTACTACAAGTTTATTGTTAATGGAGAATGGATGCATTCAACTGCTTCACCAGAAGAAAGCGATGATAGGGTTTGGAAGGTATTTCCAGTAAGGAGTTATCCTCTCGTGGAAGATTACTGTGTTAAGAGACCTTAG 1632 0.4295 MLLLRFTTNPHPPPPFLPCITNATSSSFCPTHRSLFNNGNKNCFVRSNVRTHTLRVFAMSDSKAYKMNLNQYLVTLERPLGIRFALTADGNIIVHSLTKGGNAERSRIIMVGDTLKKLGDSSQNKLVEIKDVGDTQKVLNEQANSFSLVLERPTSPFPIQLLHKMIDLEILFNRGRVPIISWSKTLLASNLQPSSESSGNSGFVVFNSKFLTLKGSQLLGNQNQDAITYGERNFITQQTTQLACIFTGEACGDGEWAHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQLFVGSCIQTEADVETLSNVEGITAVLNFQSGNEAENWGINVRSINDSCQRNNILMINYSIRDRDSYDLRKKLPFCVGLLLRLLRKNHRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVERGKHDGPPTHAVTFVWNGHEEDDVTLVGDFTANWKEPLKAVYQGARHEVEVKLPQGKYYYKFIVNGEWMHSTASPEESDDRVWKVFPVRSYPLVEDYCVKRP 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02981 543 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 276 419 IPR029021 -
Aip06g02981 543 ProSiteProfiles PDZ domain profile. 73 154 IPR001478 GO:0005515
Aip06g02981 543 CDD E_set_AMPKbeta_like_N 453 521 - -
Aip06g02981 543 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 44 522 - -
Aip06g02981 543 Pfam Glycogen recognition site of AMP-activated protein kinase 453 521 IPR032640 -
Aip06g02981 543 Pfam Dual specificity phosphatase, catalytic domain 307 416 IPR000340 GO:0008138|GO:0016311
Aip06g02981 543 SUPERFAMILY PDZ domain-like 73 166 IPR036034 GO:0005515
Aip06g02981 543 Gene3D Protein tyrosine phosphatase superfamily 279 439 IPR029021 -
Aip06g02981 543 ProSiteProfiles Dual specificity protein phosphatase domain profile. 286 448 IPR020422 GO:0006470|GO:0008138
Aip06g02981 543 Gene3D Immunoglobulins 440 522 IPR013783 -
Aip06g02981 543 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 44 522 IPR030066 GO:0005983
Aip06g02981 543 CDD DSP_laforin-like 285 431 IPR045204 GO:0019203|GO:0046838
Aip06g02981 543 SUPERFAMILY E set domains 450 521 IPR014756 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02981 138 522 Protein tyrosine phosphatase (PTP) family AT3G01510 66.321 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02981 - - adu:107495061 1047.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02981 06 123987933 123994446 Aip06g02981 06 123987933 123994446 ECH