Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02952 ATGCATCAATCAAGTTCCCTCCTTTTCATTCTTTTCATTCTTCTCTCAACTCATATAAATTCAAACCACAATCCAACGTTTTCACTTAACAAACAACAATTTATGAAGACATCATCATTCACTGACCTCCTTTCAAACAACTATAGTAACATAAACATGAACATGGATGATTTTGGTGATGCTAATGTTATTCAAAACCAAGATTCTGTTCCAAAATTTAAGTCTGTTACACCACCTTCACTGCCACTTGAGAACTCACAAACTTCTTCTTACTTTCCTTTTACATCATCAACTTTTAGCCCAACTGAGTTTTTGAACTCATCTTTGTTCCTTTCTTCTCCTAATATTTTTGCATCTCCTACTATTGAGGCTTTTGCTGGCCACAGCTTCAACAACAAGGAAGATGAGAAGAACTTCTCTGAATTCTCTTTCCAAACACAGACTAAGACATCTTCTCCCTCTCAAGCAGAACCACTTAAGACACAAGACATGTGGAAATTCACAGAACCTATAAACCAAGCTGAATTTTCATCTCAGACAAAATCTGAATATCCATCAACACAGAGCTTCTCCTCAGAAATGGTAGCAACAAAACCCGAATTACAAAGCAATTCGGTGCCTGAGTCCGGTTCTTTCAACTATGCTAACACGTCTCAGTCCATTAAAGAACAAAGGAGATCAGAAGATGGTTACAATTGGAGGAAATATGGACAGAAACAAGTGAAAGGGAGTGAGAATCCACGGAGCTATTACAAGTGCACACATCCGAATTGCGCAATGAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACAAATTACTGAGATAGTGTATAAGGGAACTCATAATCATCCTAAGCCACAGAGTACTAGAAGAAGTTCAAGCTCTCAACAAATTATTCATCAGCAGCCTTCTTCATCCTGCACTAACTCAGGAATCTCGGATCAGTCAGTGGTGACACTAGGCAATCCTCAATTTGATCGTGTGTCGATGCAAGAAGATTCTTCAGCTTCTATGGGAGAGGAAGAATTTGAACAAACTTCTCCAACAAGTTACTCTGGTGGAGATGCAGATGAACTTGGACCAGATGCCAAAAGATGGTAA 1101 0.3896 MHQSSSLLFILFILLSTHINSNHNPTFSLNKQQFMKTSSFTDLLSNNYSNINMNMDDFGDANVIQNQDSVPKFKSVTPPSLPLENSQTSSYFPFTSSTFSPTEFLNSSLFLSSPNIFASPTIEAFAGHSFNNKEDEKNFSEFSFQTQTKTSSPSQAEPLKTQDMWKFTEPINQAEFSSQTKSEYPSTQSFSSEMVATKPELQSNSVPESGSFNYANTSQSIKEQRRSEDGYNWRKYGQKQVKGSENPRSYYKCTHPNCAMKKKVERSLEGQITEIVYKGTHNHPKPQSTRRSSSSQQIIHQQPSSSCTNSGISDQSVVTLGNPQFDRVSMQEDSSASMGEEEFEQTSPTSYSGGDADELGPDAKRW 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02952 366 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 334 366 - -
Aip06g02952 366 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 70 329 - -
Aip06g02952 366 ProSiteProfiles WRKY domain profile. 222 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip06g02952 366 MobiDBLite consensus disorder prediction 282 353 - -
Aip06g02952 366 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 334 366 IPR044810 GO:0003700
Aip06g02952 366 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 70 329 IPR044810 GO:0003700
Aip06g02952 366 MobiDBLite consensus disorder prediction 277 366 - -
Aip06g02952 366 Pfam WRKY DNA -binding domain 228 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip06g02952 366 SUPERFAMILY WRKY DNA-binding domain 223 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip06g02952 366 SMART WRKY_cls 227 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip06g02952 366 MobiDBLite consensus disorder prediction 176 248 - -
Aip06g02952 366 MobiDBLite consensus disorder prediction 176 221 - -
Aip06g02952 366 Gene3D WRKY domain 213 287 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02952 Aip-Chr6 123081681 123084922 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02952 96 366 WRKY Transcription Factor Family AT2G38470 43.253 5.84e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aip06g02952 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02952 K13424 - gmx:100792833 395.586