Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02911 ATGGGTCACTTTTCATGCTTCGTTGTTCTAGCTCTCTCATTTCTCACTCCCTCCTCGGCAGTTCATCAAGACTCTAATCTGGTTGTACAAGATATAGACAGAGGCATGAATGGGTCAAGAAGAAACTTGGGTTACTTTTCATGTGGAACTGGTAATCCCATTGACGACTGCTGGCGTTGTGACCCAAACTGGGAAAATAACCGTCAAAAACTCGCAGATTGCGCCATCGGGTTCGGCAAGGACGCAACCGGAGGAAGAAACGGCCAAATCTATGTAGTAACGGACTCTGGAGATGATGATCCTGTGAACCCAAAACCAGGAACACTAAGACACGCAGTTATTCAAGACGAGCCACTATGGATCATTTTCAAGAGAGACATGGTGATTAATCTGAAACAAGAGCTTGTTATGAATTCCTTCAAGACTATTGACGGAAGAGGTGCTAGTGTTCACATTGCCAATGGTGGATGCATCACCATACATCATGTGAGTAACATCATCATTCATGGTATTCACATCCATGATTGTGTGCCAACTGGGCATGGGTACATAAGAGACTCTCCAAGCCATTATGGGTGGTGGACGGTGTCGGACGGAGACGGAGTTTCCATCTTTGGTTCGAAACATGTGTGGGTTGATCATTGCTCGCTGTCTAACTGCCATGATGGTCTCATTGATGCCATCCATGGATCGACGGCTATTACCATATCCAACAATTACATGACGCATCATAACAAGGTGATGCTGCTGGGTCATAGTGACGACTACACTCAAGACAAGGACATGCAAGTCACAATAGCCTATAATCATTTTGGAGAAGGCCTCGTTCAAAGGATATTAGTACTCTTATTATAA 855 0.4468 MGHFSCFVVLALSFLTPSSAVHQDSNLVVQDIDRGMNGSRRNLGYFSCGTGNPIDDCWRCDPNWENNRQKLADCAIGFGKDATGGRNGQIYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIIFKRDMVINLKQELVMNSFKTIDGRGASVHIANGGCITIHHVSNIIIHGIHIHDCVPTGHGYIRDSPSHYGWWTVSDGDGVSIFGSKHVWVDHCSLSNCHDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDDYTQDKDMQVTIAYNHFGEGLVQRILVLLL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02911 284 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Aip06g02911 284 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
Aip06g02911 284 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
Aip06g02911 284 PRINTS Pollen allergen Amb family signature 198 219 IPR018082 -
Aip06g02911 284 PANTHER PECTATE LYASE 18-RELATED 19 279 IPR045032 GO:0030570
Aip06g02911 284 SUPERFAMILY Pectin lyase-like 35 279 IPR011050 -
Aip06g02911 284 SMART amb_all 126 284 IPR002022 -
Aip06g02911 284 Gene3D - 51 281 IPR012334 -
Aip06g02911 284 Pfam Pectate lyase 132 272 IPR002022 -
Aip06g02911 284 PANTHER OS04G0137100 PROTEIN 19 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02911 Aip-Chr6 122293430 122295439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02911 4 279 Polysaccharide Lyase AT5G63180 73.741 3.35e-152 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02911 K01728 - gmx:100810380 487.648