Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02867 ATGGGAAGAAGTTGTTCTTCCATATCACTCTTCCTTGCCTTGAAGTTATTACTACTACTAGTAGCATGGTCATCAAAAAGGGGACACTGCTTAACTACCCCACGACCAAGGACCACTAATAAGAGCATAGGTGCAGTGCTTGATCTGGATTCACTAATGGGTAAGCAGCAGAAGATAGCCATGAAAATTGCCATCAGAGATTTCAACAGATTCAGTAGAACTAAACTCCAGTTGGAGGTGGGAAATTCCCGCGGGAATTCGGCTCAAACAGTTGTTAACGCCATGGATCTTGCACAGAAGAAGCAGTTGCTAGCCATCATAGGAACAATAACACACAGCGAAGCATATTTGGCAACTGAAATTAATAACGCCACAAAAAACACCCCTATATTATCTCTATCTTCGTTTGCACCCATCACAGAGTTACCCTCTTCTCCATTGCCACAACTAATCCAACTCGGAGATGATATCAACATTCAGATGCAATGCCTTGCAGCCATTGTAGGACACTTCAAGTGGAAAAAAGTGACAACAATATATGAAGTTAATAGTGGGTTTTCTTATGATCCAGGGGTACTAATTTCCCTCTCCAATTCTCTTCGCCATGTTGGATCTGAGATCGTTAACCAGTTAGCATTGCCTTCCTTGTCTTTGCAATCTAGAATCGAAAATGAGCTTAACCAACTCAAGAAGAAGAGTAACAGGGTCTTCTTGATTGTGCACTCTTCTTTAGAGTTGGCTAGCGTGCTTTGCAAGAAAGCAAAACAAATGGGTTTGATGGAGAAAGGATATGTATGGATCATCCCGAACGAGGTTGCTGCCCTTCTTGATTCGGTTAACTCTTCAGTTATCTCTACCATGCAAGGTGTTATTGGATTCAAAACACATTTTTTGGAAAGTACCAAACCATATACAAAGTTCGGGTTCAGATTTCGAACAAGGTTTGCACTAGAGTACCCTGAAGAAGAAGAGAACAATACTCCAAGTGTTTTCGCACTTCGAGCTTATGATGCAGCTTTTGCTATTGCTAATGCTAAGGTTACAAACAAGTCACAAGGAAAGTTCAACATGAAAGAATTCCTTGATGAAAATTTACATCAATCTTCAACCTTCACCATAATTAATGTGATAGGAAAAAGCTATAGAGAAATGGCATTTTGGTCTCCAACACATGGTTTTTCCAAGAACTTTGTTGAACATGAGAAAATGGAGGTAAATAAATTTAACGGTTATGATGGAGTTGTTTTGAGTAATATTTATTGGCCTGGAGATTTACACTCAGTTCCAAGGGGATGGACAAATAGTAATGAGGAAATGCCACTTAAAATAGGAGTACCTGCAAATGATGCTTTTGCTCAGTTTGTGAATGTCACCTATGGTGACAGCAAGCATGCAACTTCCATAACTGGTTTTTCAATCAATGTCTTCAAAGCAGCTATTAAGAATCTTCCATATCACTTGCACTATGATTTTGTTCCCTTCAATGGCTCCTATGATGAAATGGTTAATCAAGTTAACAATAAGACATTAGATGCTGCAGTTGGAGATATATCAATATTGGCATATAGATATCATTTAGTTGAGTTCTCACAACCATATGTTGACTCTGGACTTAACATGGTGGTCGTTGAGAAGCCAAATAAATCAAAACAAACATGGATGTTTATGGATGCATTCACAAAAGAGATGTGGTTGATGATGGCAGCAGTGCACGTTTTGGTTGGATTTGTCATTTGGTTGATTGAACGCGAAGAAAATGAAGAACTACAAGGTCTGGGGGCGATGCTTTGGTTTTTAGTCACCGTAATATTCCTTGCACATAGAGAACCAATAAGAAGACCATTGGCTCGAACCGTGTTGGCACCATGGTTATTTGTTATCCTAATTGTAACCAGTAGCTTCACAGCGAGTCTAACATCGATGATGACTGTATCGCAACTCGAACCATCAGTGGTTGATATTCAGACCCTTCAGAAGAGAAATGCTCCAGTTGGTTGTGATGAGAATTCATTTATTGTGAGGTGTTTCAAAGGGGCTCCTCTTTGGCTAGGGATATATCCGAGGCATTGCTAA 2073 0.3975 MGRSCSSISLFLALKLLLLLVAWSSKRGHCLTTPRPRTTNKSIGAVLDLDSLMGKQQKIAMKIAIRDFNRFSRTKLQLEVGNSRGNSAQTVVNAMDLAQKKQLLAIIGTITHSEAYLATEINNATKNTPILSLSSFAPITELPSSPLPQLIQLGDDINIQMQCLAAIVGHFKWKKVTTIYEVNSGFSYDPGVLISLSNSLRHVGSEIVNQLALPSLSLQSRIENELNQLKKKSNRVFLIVHSSLELASVLCKKAKQMGLMEKGYVWIIPNEVAALLDSVNSSVISTMQGVIGFKTHFLESTKPYTKFGFRFRTRFALEYPEEEENNTPSVFALRAYDAAFAIANAKVTNKSQGKFNMKEFLDENLHQSSTFTIINVIGKSYREMAFWSPTHGFSKNFVEHEKMEVNKFNGYDGVVLSNIYWPGDLHSVPRGWTNSNEEMPLKIGVPANDAFAQFVNVTYGDSKHATSITGFSINVFKAAIKNLPYHLHYDFVPFNGSYDEMVNQVNNKTLDAAVGDISILAYRYHLVEFSQPYVDSGLNMVVVEKPNKSKQTWMFMDAFTKEMWLMMAAVHVLVGFVIWLIEREENEELQGLGAMLWFLVTVIFLAHREPIRRPLARTVLAPWLFVILIVTSSFTASLTSMMTVSQLEPSVVDIQTLQKRNAPVGCDENSFIVRCFKGAPLWLGIYPRHC 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02867 690 SUPERFAMILY Periplasmic binding protein-like I 43 432 IPR028082 -
Aip06g02867 690 Gene3D - 460 535 - -
Aip06g02867 690 Gene3D - 156 327 - -
Aip06g02867 690 CDD PBP1_GABAb_receptor_plant 42 397 IPR044440 -
Aip06g02867 690 SMART GluR_14 442 626 IPR001320 GO:0015276|GO:0016020
Aip06g02867 690 PANTHER GLUTAMATE RECEPTOR 39 674 - -
Aip06g02867 690 Pfam Bacterial extracellular solute-binding proteins, family 3 465 552 IPR001638 -
Aip06g02867 690 SUPERFAMILY Periplasmic binding protein-like II 417 570 - -
Aip06g02867 690 Pfam Ligand-gated ion channel 561 668 IPR001320 GO:0015276|GO:0016020
Aip06g02867 690 Pfam Receptor family ligand binding region 58 345 IPR001828 -
Aip06g02867 690 Gene3D - 553 672 - -
Aip06g02867 690 Gene3D - 335 443 - -
Aip06g02867 690 Gene3D - 38 152 - -
Aip06g02867 690 Gene3D - 536 545 - -
Aip06g02867 690 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02867 Aip-Chr6 121264875 121270785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02867 37 677 Ion Channels AT2G29120 30.747 5.96e-98 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02867 - - aip:107605043 1306.58