Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02852 ATGATCATGACCTTCTTACACATGAAAGCATTGATCTGTTTCTTCTTCTTTGTGTTTGTCCCCACATCGGGGAATGACCTCTTAAGCTGTGAGACAACTTCACCAGATGCATCTGGCTACAGCTGCATACAAAATAATAAAAGCTCTATTCAATGTGCAACATTTGCACTCATTCACACAAATCCATACTTTTCTTCTCTCTCAAACCTCACTCATTACTTGGGACTTAACCGTTTTGTGATAGCAAAATCAAATGGTTTCTCTCCAGAAAACACTGAAATCCTCTCCAATGATCAACCCCTTTTAATACCAATTGATTGCAAGTGCAGCAAACATGGTTTTTTCTATGCTGAATTGACCAAAACCACCATCAAAGGTGAGAGCTTCCATGGCATTGCTGAATCACTTGAAGGCTTAACTACCTGCAAGGCCATAAAAGATCGAAACCCCGGCGTGTCGCCTTCGAATCTCGACGGAGAATTCAAGTTGCTGATTCCATTAAGATGTGCATGCCCAGTTTCATCTTCTCAAGAACAAAGGGCTCTGCTTTCTTATCCTGTAAGTAAAGGCGACACGGTTTCGAATTTGGCTTCAAAGTTTAATGTTACCATAGAATCCATAATTTCTACAAATAATTTATCATCATCAGAAGGGTTTGAAACTCAAAGCCTTACACCTTTTACATGTCTTCTGATTCCATTGTTAAATAATAATCCTGTGGCTAAACCCTCTAATAATCCTGTGATTAGTCCACATAAGAAAACAAAAATGTGGAGGACTGAACTGTGTATTGGCCTAGCCGGTGTTGCACTTGGACTCTTCATTGCTTCGTTAGTGGGATTCTTTTTCATCAGATTGAAGAACAAGAAGCAGAGTGTGAAGAACAATAATAAGTGTAAAGAGTTAGATATGGAGCTTCAACATCTGAATCTCAGTGTAAGAACAACCAGTGACAAAAAAGTCTCATTCGAGGTACCTCACGAGGGGAAGATCCTAGAAGCTGCGACGCCTCGAAAGATGTTCCTTGAGACATACACAAGGGAGGAAATTCGGAACGCAACAGAAGACTTCAGCTCAAGCAATCACATTGAGGGGCCGGTGTTCCATGGCCGATTGAACGGCAAGAACATAGCAATAAAAAGAACAACGAACGATGTCGTTTCGAAGATAGAGTTCGGCCTCTTCCACCACTCAGTTCAACGTCACCCCAACATTCTAATGCTTCTTGGAACAACAAGCTTGCTAGAGGGTCCAGATTCCTACCTGGTTTTCGAGTATGCGAAAAACGGATCCTTGAAAGACTGGCTTCACGGTGGCTTGGCAATCAAGAATCAGTTCATTGCTTCATGCTATTGTTTCTTGACGTGGAGGCAGAGGCTCCGGATCTGCCTCGACATAGCCGGCGCCTTGCAGTACATGCACCATGTGATGATCCCAAGCTATGTTCATAGGAACATAAAGAGTAGGAACATTTTCTTGGATGAAGAGTTTGGCGCAAAACTTGGGAATTTCGGTATGGCAATGTGTGCTGAGAATGAAACTGAAGATCCACATTTCTATTCCACAAACCCTGCTTCTTGGAGCCTTGGTTATTTGGCACCTGAATTTGTTCATCAAGGTGTAGTTTCACCAAGCATTGATGTGTTTGCTTATGGGGTGGTTTTGTTGGAGGTTTTGTCCGGCCAAACACCCATAAGCAGGCCTAATGACAAGGGTGAAGGGAGTGTTTGGCTCACGGATAAAATCCGGTCGATTTTGGCGTCGGAGAAGAATGCAAGTGAGCTGAGGGAGTGGGTTGATAGTGCCTTAGGGGAGAACTATTCGTTCGATGCAGCTTTCGAATTGGCTAACATTGCAAGGGCTTGTGTTGAAGATGAGGCTTCTTTGAGACCAAGTGCAAATGAAATTGTTGACAAGATTTCAAGATTGGTGGAGGAGTTTCCGGATGGGGAACACCACATGTTAATCACCGAAAGCTCTAGCAAGCCATTGGTTAATGCTGCCATTGATGAACTTTCGAAAATAATTGTATGCATCCATGCTCGCCTATGTCGCTGTCTCCCTCACCGGACACCCTGGATGCCGCGGAGCTTCTTCTCCCTCTTGGTGCCACATACCGATCAGAAGCAACAGCACCAAGCAAGCCGGAGGCGGTACACCACCATCACCGCCAACTGCAACAACATCGTTGACACGGGCTCTGTTCTATGGCCAGTGAAGGAGGTTCCTCGAGCACGTAACGAGTTCGATTGCCATCTAACATTCGTTGCGTGGAAGGTAGAGACGAGAAGGATGACATTGCTCCAATGTGCAAATGTGAAGCGTATGCTATATTGTATAAGTCCAAGACGCCAACTAACCCCCAACCGGTTGTTTCTTAGGTGCCCCTTCTTCAAGTTGAAAAATCCATTTCACTGCAAGTTCTTTGTCTGGCTTGATGATCATGTTGCAAAAATTGGGAGTACAGAGAAGTAA 2475 0.4412 MIMTFLHMKALICFFFFVFVPTSGNDLLSCETTSPDASGYSCIQNNKSSIQCATFALIHTNPYFSSLSNLTHYLGLNRFVIAKSNGFSPENTEILSNDQPLLIPIDCKCSKHGFFYAELTKTTIKGESFHGIAESLEGLTTCKAIKDRNPGVSPSNLDGEFKLLIPLRCACPVSSSQEQRALLSYPVSKGDTVSNLASKFNVTIESIISTNNLSSSEGFETQSLTPFTCLLIPLLNNNPVAKPSNNPVISPHKKTKMWRTELCIGLAGVALGLFIASLVGFFFIRLKNKKQSVKNNNKCKELDMELQHLNLSVRTTSDKKVSFEVPHEGKILEAATPRKMFLETYTREEIRNATEDFSSSNHIEGPVFHGRLNGKNIAIKRTTNDVVSKIEFGLFHHSVQRHPNILMLLGTTSLLEGPDSYLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWRQRLRICLDIAGALQYMHHVMIPSYVHRNIKSRNIFLDEEFGAKLGNFGMAMCAENETEDPHFYSTNPASWSLGYLAPEFVHQGVVSPSIDVFAYGVVLLEVLSGQTPISRPNDKGEGSVWLTDKIRSILASEKNASELREWVDSALGENYSFDAAFELANIARACVEDEASLRPSANEIVDKISRLVEEFPDGEHHMLITESSSKPLVNAAIDELSKIIVCIHARLCRCLPHRTPWMPRSFFSLLVPHTDQKQQHQASRRRYTTITANCNNIVDTGSVLWPVKEVPRARNEFDCHLTFVAWKVETRRMTLLQCANVKRMLYCISPRRQLTPNRLFLRCPFFKLKNPFHCKFFVWLDDHVAKIGSTEK 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02852 824 Pfam LysM domain 185 217 IPR018392 -
Aip06g02852 824 Pfam Protein kinase domain 372 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g02852 824 PANTHER PROTEIN LYK2 6 669 - -
Aip06g02852 824 ProSiteProfiles Protein kinase domain profile. 353 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g02852 824 ProSiteProfiles LysM domain profile. 119 165 IPR018392 -
Aip06g02852 824 ProSiteProfiles LysM domain profile. 183 232 IPR018392 -
Aip06g02852 824 Gene3D Phosphorylase Kinase; domain 1 332 426 - -
Aip06g02852 824 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 6 669 - -
Aip06g02852 824 SUPERFAMILY Protein kinase-like (PK-like) 341 638 IPR011009 -
Aip06g02852 824 CDD LysM 184 216 IPR018392 -
Aip06g02852 824 Gene3D Transferase(Phosphotransferase) domain 1 427 658 - -
Aip06g02852 824 Gene3D LysM domain 172 242 IPR036779 -
Aip06g02852 824 SMART LysM_2 184 233 IPR018392 -
Aip06g02852 824 SMART LysM_2 120 166 IPR018392 -
Aip06g02852 824 SUPERFAMILY LysM domain 184 216 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02852 Aip-Chr6 120917220 120926413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02852 39 668 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.305 1.16e-145 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Aip06g02852 Pkinase 4.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02852 - - gmx:100816082 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02852 06 120917220 120926413 Aip06g02852 06 120917220 120926413 ECH