Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip06g02824 | ATGACGTCGCCATTTGGTTTTTCCTGGGAAGTGTCATCTCCCTCATTGTTGCAAGAACAGGAGGAAGATTTGGAACTTTATCTAACTCTCATCGGAGATAAAATAGCAGATTACTTCATTCTCAAGGTACGAGTTAGGCATCAAACGTGCTGGACTACTCATCCTCAACAACCACAATCACATTATCCAGTGTTAGGAGCCAATGATACGTTTGCATGTCACAGCTCAATTCTAATGCAAGCGCAAGAATTCCTTCAAAACGGTTCATCACACATGCAATTGCGTTTTCCTGATGATGTTATACCAAATGTCTTGATTCATCACATGATGCCAGATGTCATATCCTACGCGGAAACCATACTTCAAACTCGTCGTTCCGGATTTCTCTACGAAAGACCTGATTTTCGTTTGTTCAGTTTGAATTTGGACATTATTATCCAGAATTCGTTATTATTTGTTGATGAGTACGACGACATTATCACCGACTTCGTCATTGAAGAGTCCATGGGAAATACTAATATTAAGATGGTTCCTACTTCGAAGAGTGCCATTGATTCTCTTGAGGAAGTGAAGCTTGAAAAGAATAACAATGCAACAGAGAGGTGCAGTATTTGTCTATCTGAATTTGATGACGGTGATGATGCAGAACAAGTATTATCAATGCCTTGTAAGCATGTGTATCATCAAGAATGCATCATCCGCTGGCTCAAGACTAGTCATTTATGCCCTTTATGTCGCTATCCGATGCCAACTAATTAA | 759 | 0.3979 | MTSPFGFSWEVSSPSLLQEQEEDLELYLTLIGDKIADYFILKVRVRHQTCWTTHPQQPQSHYPVLGANDTFACHSSILMQAQEFLQNGSSHMQLRFPDDVIPNVLIHHMMPDVISYAETILQTRRSGFLYERPDFRLFSLNLDIIIQNSLLFVDEYDDIITDFVIEESMGNTNIKMVPTSKSAIDSLEEVKLEKNNNATERCSICLSEFDDGDDAEQVLSMPCKHVYHQECIIRWLKTSHLCPLCRYPMPTN | 252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip06g02824 | 252 | ProSiteProfiles | Zinc finger RING-type profile. | 202 | 246 | IPR001841 | - | |
| Aip06g02824 | 252 | SMART | ringv_2 | 201 | 246 | IPR011016 | GO:0008270 | |
| Aip06g02824 | 252 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 166 | 251 | IPR013083 | - | |
| Aip06g02824 | 252 | Pfam | Ring finger domain | 201 | 246 | IPR001841 | - | |
| Aip06g02824 | 252 | SMART | ring_2 | 202 | 245 | IPR001841 | - | |
| Aip06g02824 | 252 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 101 | 251 | - | - | |
| Aip06g02824 | 252 | PANTHER | F6A14.12 PROTEIN-RELATED | 101 | 251 | - | - | |
| Aip06g02824 | 252 | SUPERFAMILY | RING/U-box | 184 | 250 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip06g02824 | Aip-Chr6 | 120190030 | 120190788 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip06g02824 | 173 | 250 | C3H Transcription Factor Family | AT1G18760 | 42.308 | 1.20e-19 | 82.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip06g02824 | - | - | adu:110276959 | 375.555 |