Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02820 ATGACGTGGCCATTTGGTTTTTCCTGGGAAGTGTCATCTCCCTCATTGTTGCAAGAACAGGAGGCAGATTTGCAACTTTATCTAACTCACATGAGAGATAAAACAGCAGATTACTTCATTCTCAAGGTACGAGTTAGGCATCAAACGTGTTGGACTACTCATCCTCAACAACCACAATCACATTATCCGCCGGTGTTAGGAGCCATTGATACGTTTGCATGTCACAGCTCAATTCTAATGCAAGCGCAAGAATTCCTTCAAAACGGTTCATCACACATGCAATTGCATTTTCCTGATGATGTTATACCAAATGTCTTGATTCATCACATGATGCCAGATGTCATATCCTACGCGGAAGACACAATTCAAACTCGTCCTTCCGGATTCCTCTACGAAAGACCTGATTTTCGTTTGTTCAGTTTGAATTTGGACATTATTATCCAGAATTCGTTTGTGTTTGTTGATGACTACGACGACATTATCACCGACTTCATCATTGAAGAGTCCATGGGAAATACTAATATTAAGATGGTTCCTACTTCGAAGAGTGCCATTGATTCTCTTGAGGAAGTGAAGCTTGAAAAGAATAACAATGCAACAGAGAGGTGCAGTATTTGTCTATCTGAATTTGATTACGGTGATGATGCAGAACAAGTTTTATCAATGCCTTGTAAGCATGTGTATCATCAAGAATGCATCATCCACTGGCTCAAGACTAGTCATTTATGCCCTTTATGTCGCTATCCGATGGCAACAAATTAG 762 0.4016 MTWPFGFSWEVSSPSLLQEQEADLQLYLTHMRDKTADYFILKVRVRHQTCWTTHPQQPQSHYPPVLGAIDTFACHSSILMQAQEFLQNGSSHMQLHFPDDVIPNVLIHHMMPDVISYAEDTIQTRPSGFLYERPDFRLFSLNLDIIIQNSFVFVDDYDDIITDFIIEESMGNTNIKMVPTSKSAIDSLEEVKLEKNNNATERCSICLSEFDYGDDAEQVLSMPCKHVYHQECIIHWLKTSHLCPLCRYPMATN 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02820 253 SMART ringv_2 202 247 IPR011016 GO:0008270
Aip06g02820 253 Pfam Ring finger domain 202 247 IPR001841 -
Aip06g02820 253 ProSiteProfiles Zinc finger RING-type profile. 203 247 IPR001841 -
Aip06g02820 253 PANTHER F6A14.12 PROTEIN-RELATED 102 250 - -
Aip06g02820 253 SUPERFAMILY RING/U-box 185 251 - -
Aip06g02820 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 252 IPR013083 -
Aip06g02820 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 102 250 - -
Aip06g02820 253 SMART ring_2 203 246 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02820 Aip-Chr6 120145278 120146039 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02820 174 250 C3H Transcription Factor Family AT1G18760 40.260 1.11e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02820 - - adu:110276959 376.711