Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02726 ATGTTGTTACCGTGCGACTACTGCGACTCCAAAACGGCAGTTCTCTTTTGCCGCGCCGACTCTGCCAAGCTCTGCATCTCATGTGACCAGCACGTGCACTCCGCCAACGCCCTCTCACTCAAGCACGTGCGCTCTCAGATTTGCGATAACTGCCGCAACGAACCTGCCGCCGTGCGATGCGCCACCGACAATCTCGTCCTCTGCAACGACTGCGACTCCGACGCACACAACAGTTCCTCCGTCGCCATCTCCCTCCACGCCCGCCACCGCCTCCATGGCTTCTCCGGCTGTCCCCCCGCCCTCGAAATCGCCGCCGCCTTAGGGATCGAGCTCAAGTTCAACTCCAACTGCAACGGCGGCTCCGGTAACACATCTGGATTCGACGAGATTAAAGGTCCGGTTGTGCCGATCGTGAAGGACAAGGTGTATGAGCAGGTGCTGGAGATGGCGAGAAGGAACGGCACGGCGGCGGATCGAAACGAAGAAGTTGAAGCTGGATTGTGCCCTGATACGCCGCCGTGCGTTCAGGGTGCTGAGGAGAAGGGTGAATTGAATACTTGTAACAGTTTTAGTAACAATAAGAGGAGTGCGAATCGTAACAACAATAACAAGAATAACGATGATGAGTTGTTGATGGAACAAACGCCGTTCACTTCTTTGTTGATGCTGCCTTCTGATGGCGGAAGCGTGAAGAGAAATGATTGCGGCAGTGAAGGGGATCTTCTCTGGAATAATTGCAATCCTGCGTATCAGCCTCCTCAGGTATGGGATTTTCAGTTACAAAAATCAAGAGATATATCAACTCCTCAACAATTGATGATATTCTATCAAGAAATAGTAATGAATCAATTATTTTTTTTTCTTTTTATGAAAAATTTTCAGAATCAATCGGATCAGTCGTCTTCAAACCATGTGATGAAGAACGAAGAAAGCAACAAGAAACCTAGAGGTGGATTATCATCAGAGTCCAAATTGGTTGAACCCATAACATACAGTAGCACCAACAATGCCGCATACATGGAGCATCTCGTGAGTGGGAGTGAAAATGTTAGCACCATAAAGGACAAGGTTAACTTTGAAGAGCTGACTAAAAATAGAGGGGATGCCATGTTACGCTACAAGGAAAAGAAGAAAACTCGAAGGTACGATAAGCACATTCGCTATGAATCGAGAAAAGCGAGGGCTGATACGAGAAAAAGGGTGAAAGGACGATTTGTGAAGGCAAGTGATGCAAGTGATGTTCAAAACGAAGAATGA 1257 0.4797 MLLPCDYCDSKTAVLFCRADSAKLCISCDQHVHSANALSLKHVRSQICDNCRNEPAAVRCATDNLVLCNDCDSDAHNSSSVAISLHARHRLHGFSGCPPALEIAAALGIELKFNSNCNGGSGNTSGFDEIKGPVVPIVKDKVYEQVLEMARRNGTAADRNEEVEAGLCPDTPPCVQGAEEKGELNTCNSFSNNKRSANRNNNNKNNDDELLMEQTPFTSLLMLPSDGGSVKRNDCGSEGDLLWNNCNPAYQPPQVWDFQLQKSRDISTPQQLMIFYQEIVMNQLFFFLFMKNFQNQSDQSSSNHVMKNEESNKKPRGGLSSESKLVEPITYSSTNNAAYMEHLVSGSENVSTIKDKVNFEELTKNRGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASDASDVQNEE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02726 418 Pfam B-box zinc finger 45 89 IPR000315 GO:0008270
Aip06g02726 418 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-LIKE 293 415 - -
Aip06g02726 418 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-LIKE 3 270 - -
Aip06g02726 418 MobiDBLite consensus disorder prediction 390 418 - -
Aip06g02726 418 SMART bboxneu5 1 47 IPR000315 GO:0008270
Aip06g02726 418 SMART bboxneu5 48 85 IPR000315 GO:0008270
Aip06g02726 418 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Aip06g02726 418 Pfam CCT motif 366 408 IPR010402 GO:0005515
Aip06g02726 418 CDD Bbox1_BBX-like 4 47 - -
Aip06g02726 418 ProSiteProfiles Zinc finger B-box type profile. 43 94 IPR000315 GO:0008270
Aip06g02726 418 ProSiteProfiles CCT domain profile. 366 408 IPR010402 GO:0005515
Aip06g02726 418 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 293 415 - -
Aip06g02726 418 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 270 - -
Aip06g02726 418 MobiDBLite consensus disorder prediction 298 325 - -
Aip06g02726 418 MobiDBLite consensus disorder prediction 189 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02726 Aip-Chr6 117594011 117597951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02726 2 410 C2C2-CO-like Transcription Factor Family AT2G33500 37.156 2.41e-74 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aip06g02726 zf-B_box 7.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02726 - - ahf:112697135 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02726 06 117594011 117597951 Aip06g02726 06 117594011 117597951 ECH