Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02717 ATGATGATGGATCAGGGACAAGGAAGAGAAAACTTGCTTCTTCAGAAAACCGAGGCCTGTGCCTTCGTGGCAGGTGTTGACGCTCATGACCTTCTTCCCTCTTCTGTCACCGTTCAAGGGAACAACACCAACACCAACAGGATCATAACTACTACCATTCTCCATAACGGGTCATCATCGGAACCGGGTCGGATCCTCCATCATCATGATATTCAGTACCAGCAGGAGCAGGAGCAGGAGCAGGAGGTTGGGCTTGTTGCCACCTTTGGGAACGTGCATAGGAAGAGGAGAATGGCTAGGATGAGGAGGAGGTCCTCACCAACACTGATGCACCTTCAGTTCCACGCGAACACCACCACCCCCACTACTACTCTTTTTCCACCTCTTTCTTCTTCAAGGCAATCTTCTGATACACCACCACCACCACCACCGACACTTTCTCCTCCTCCTCCTCTTCTTCTTCCTTCTGCTGCTGTAATTGATCATACAAACTTGAGATTCCTTTTCCAAAAGGAGTTAAAGAACAGTGATGTTAGTTCTCTCAGGAGGATGGTGTTGCCAAAGAAAGCAGCAGAGGCTTTCCTTCCTCCTCTTGAATCAAAGGAAGGAATTCTTATCAGCATGGATGACCTAGATGGCATTCATGTTTGGAGTTTTAAGTACAGATTTTGGCCCAACAATAATAGTCGCATGTACGTCCTTGAAAATACTGGAGAATTTGTTAACGCACATGCTCTTCGAATGGGAGATTCTATTATGGTTTACCAAGATAGTCAAAATCATAATTATGTCATTCAAGCAAAGAAAGCTTCTGATCAAGATGAATTTATGGAGGAAACTAGCGACATGGCAAATGATATCTTCCTTAATGATTACGAAGTTAGCAAACCTGGTTGTTTCAGCTTGACTTACCCAGCTTTGAATGACACTGCAGGCATGTCATTCATATATGAGACTACATTCTCAAATGATAGTCCTCTTGACTTTTTGGGCGGATCAATGACTAATTTTTCAAGGATCGGACCAACTGAGACCTTTGGTTCTGTTGAAAATTTGTCACTTGATGACTTCTACTAA 1077 0.4383 MMMDQGQGRENLLLQKTEACAFVAGVDAHDLLPSSVTVQGNNTNTNRIITTTILHNGSSSEPGRILHHHDIQYQQEQEQEQEVGLVATFGNVHRKRRMARMRRRSSPTLMHLQFHANTTTPTTTLFPPLSSSRQSSDTPPPPPPTLSPPPPLLLPSAAVIDHTNLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPPLESKEGILISMDDLDGIHVWSFKYRFWPNNNSRMYVLENTGEFVNAHALRMGDSIMVYQDSQNHNYVIQAKKASDQDEFMEETSDMANDIFLNDYEVSKPGCFSLTYPALNDTAGMSFIYETTFSNDSPLDFLGGSMTNFSRIGPTETFGSVENLSLDDFY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02717 358 SMART B3_2 169 271 IPR003340 GO:0003677
Aip06g02717 358 MobiDBLite consensus disorder prediction 115 133 - -
Aip06g02717 358 CDD B3_DNA 167 269 IPR003340 GO:0003677
Aip06g02717 358 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 358 IPR044800 GO:0003700
Aip06g02717 358 MobiDBLite consensus disorder prediction 115 153 - -
Aip06g02717 358 Gene3D - 165 284 IPR015300 -
Aip06g02717 358 MobiDBLite consensus disorder prediction 134 153 - -
Aip06g02717 358 ProSiteProfiles B3 DNA-binding domain profile. 169 271 IPR003340 GO:0003677
Aip06g02717 358 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 44 358 - -
Aip06g02717 358 Pfam B3 DNA binding domain 169 266 IPR003340 GO:0003677
Aip06g02717 358 SUPERFAMILY DNA-binding pseudobarrel domain 167 266 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02717 Aip-Chr6 117096256 117100115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02717 139 358 B3 DNA Binding Superfamily AT3G26790 55.336 2.85e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip06g02717 B3 2.2e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02717 06 117096256 117100115 Aip06g02717 06 117096256 117100115 ECH