Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02687 ATGCCAGCTTTGATGTCATCTAGGTTTCTTCTTCTTGTTGGAGAGTCCTTCCCCATTAGAAGAGCATTGGCTACTCATAAAAATGCTTCTTCTTTGTTGCACACAAGTATTCATTGTATGAGCCAAGTGGAACCACCCAATCATGGTTCCTTAACCCTCTCAAGTGTTGGTTTCCAAGGTGAAGTTGATAAACCAATTAACAAAGGTGGCAAGTCTAGCAGCAAGGTAAAGCCATTGTTGGGTTCATCCCCTGGGTCCCTTAAGAGCAAAGGCATAGGGAAACCTATTGCTTCCAGTGAGAAGAAGAAAGCGTTTGGGATTGTTGAGAGGAAGAAACAACAAATCGAGGCTGCCCCATTTGCAGCAAAATCGTTCTCTGAACTTGGGTTGCCCCTTGTTCTGATTGAGAGACTGGAGAAAGAGGGGTTCAGTGTTCCAACTGAAGTTCAGTCTACAGCTGTTCCTACCATTCTGCAGAACCATGATGTCATAATTCAGTCTTACACGGGTTCGGGGAAGACATTGGCTTATCTGCTTCCTATACTATCATCTATTGGTCCACTGATGAACAAAGTTTCCAAGAGTGCCAGTGGTGGTGATTCTGGTGGGAAAATGGGAATAGAAGCAGTGGTTGTTGCTCCCTCTAGGGAGCTAGGGATGCAGATAGAAGAAGCTCTCAAGAAGAATAAACCTGCCATTGTTGTTGGCACACCTGGTAGGATAGCGGAACTTAGTGCAGCAGGGAAGCTTCGGACACATGGCTGTCGCTATTTGGTATTGGATGAAGTTGATGAGCTCTTGTCATTCAATTTTTGGGAGGACATGCACCGGATATTGGAGCATGTAGGCAGGAGATCAGGTGCAGACCCGGATCCAAATGTTAAAAGGACTGAGCGTCAGTTAATTATGGTGTCTGCAACTGTGCCGTTTTCTGTTGTAAGAGCAGCGAGGAGCTGGGGATGTGATCCACTTCTCGTCCAAGCTAAGAAAGTTATCCCGCTTGATACTGTCTCGCCTTCGGCCCCTATCAATTTGTCAAGGCCTTCGGTCGGTTCTACTCCAGACCCAACTAAGCCATCTCAGGCATCAGTAGAGAGTTTGCCTCCGGCTTTGAAACACTATTACTGTGTAGCAAGGTTACAGCATAAGGTCGATACCATGAGAAAGTGTATTCATGCCTTGGATGCAAAAGTTGTAATAGCTTTCATGAACAACACTAAGCAACTAAAGGATGTCGTCTTCAAGGAGGCCTGTGGAATGAAAGCGGCAGAGTTGCATGGGGATCTTGGGAAGCTTGCTAGGTCATCAACTTTGAAGAAATTCAAGAATGGCGAGGTGAGAGTTCTAGTGACAAATGAATTATCAGCTAGAGGTTTGGATGTGGCAGAATGTGATCTCGTGGTTAATCTGGACTTACCTACGGATTCAACTCACTATGCACACCGAGCAGGCCGAACTGGTCGGCTTGGTAGGGATGGTACAGTGCTGACCATATGTGAAGAGTCCGAAGTGTTTATTGTGAAGAAAATGGAGAAGCAGCTTGGAGTAACTGTGGCGTTCTGCGATTTTGTTGAGGGAAAGATGCTTGTCAACCAAGAAGAGAAAGCACTCAGCACTTCAAGAAAATGA 1629 0.4573 MPALMSSRFLLLVGESFPIRRALATHKNASSLLHTSIHCMSQVEPPNHGSLTLSSVGFQGEVDKPINKGGKSSSKVKPLLGSSPGSLKSKGIGKPIASSEKKKAFGIVERKKQQIEAAPFAAKSFSELGLPLVLIERLEKEGFSVPTEVQSTAVPTILQNHDVIIQSYTGSGKTLAYLLPILSSIGPLMNKVSKSASGGDSGGKMGIEAVVVAPSRELGMQIEEALKKNKPAIVVGTPGRIAELSAAGKLRTHGCRYLVLDEVDELLSFNFWEDMHRILEHVGRRSGADPDPNVKRTERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKVIPLDTVSPSAPINLSRPSVGSTPDPTKPSQASVESLPPALKHYYCVARLQHKVDTMRKCIHALDAKVVIAFMNNTKQLKDVVFKEACGMKAAELHGDLGKLARSSTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSTHYAHRAGRTGRLGRDGTVLTICEESEVFIVKKMEKQLGVTVAFCDFVEGKMLVNQEEKALSTSRK 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02687 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 327 IPR027417 -
Aip06g02687 542 Pfam DEAD/DEAH box helicase 147 229 IPR011545 GO:0003676|GO:0005524
Aip06g02687 542 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 386 529 IPR001650 -
Aip06g02687 542 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 123 151 IPR014014 GO:0003724
Aip06g02687 542 SMART helicmild6 408 490 IPR001650 -
Aip06g02687 542 Gene3D - 227 332 IPR027417 -
Aip06g02687 542 SMART ultradead3 142 337 IPR014001 -
Aip06g02687 542 Gene3D - 95 226 IPR027417 -
Aip06g02687 542 CDD SF2_C_DEAD 371 499 - -
Aip06g02687 542 MobiDBLite consensus disorder prediction 343 364 - -
Aip06g02687 542 CDD DEADc 134 327 - -
Aip06g02687 542 Pfam Helicase conserved C-terminal domain 389 490 IPR001650 -
Aip06g02687 542 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 326 IPR014001 -
Aip06g02687 542 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 22 224 - -
Aip06g02687 542 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 223 518 - -
Aip06g02687 542 Gene3D - 368 523 IPR027417 -
Aip06g02687 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 520 IPR027417 -
Aip06g02687 542 MobiDBLite consensus disorder prediction 64 94 - -
Aip06g02687 542 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 22 224 - -
Aip06g02687 542 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 223 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02687 Aip-Chr6 116710708 116712420 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02687 124 518 Eukaryotic Initiation Factors Gene Family AT3G19760 23.697 6.56e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02687 - - aip:107613119 977.237