Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02682 ATGCGCCTAGAGCTCCGTAATCCGCATGTCACCGCGCCTCGAGCTTCGCTGTCCGTATTCACTGCGCTTCAAGCTCCACCGTCTCTTGGTCTCGTGAGTTCTGCCACCGTCGAGTCTCTCCGTCTCGAGCATTGTCACCTTCGGCTTGCCAACGTCGCGGCTGACCCGCCGTCCTTTTCTCCGAGCTCTGTTTTTTCGACGTCCTCTTTTCCAGCCCTCCCCTTCGTGGTAAAGTTTACATCAATGCTGCCAGCTTTGATGCCATCTAGGTTTCTTCTTCTTGTTGGAGAGTCCTTCCCCATTAGAAAAGCATTGGTTACTCATAAAAATACTTCTTCTTTGTTGCACACAAGTATTCATTGTAAGAGCCAAGTGGAACCACCCAATCATGGTTCCTTAACCCTCTCAAGTGTTAGTTTCCAAAGTGAAGTTGATAAACCAATTAACAAAGGTGGCAAGTCTAGCAGTAAGGTAAAGCCATTGTTGGGTTCATCCCCGGGGTCCCTTAAGAGCAAAGGCATAGGGAAACCTATTGGTTCCAGTGAGAAGAAGAAAGCGTTCGGGATTGTTGATAGGAAGAAACAACAAATCAAGGCTGCCCCATTTGCAGTAAAATCGTTCTCTGAACTTGGGTTGCCCCTTGTTCTAATTGAGAGACTTGAGAAAGAGGGGATCAGTGTTCCAACTGGGGTTCAGTCTGTAGCTGTTCCTACCATTCTGCAGAACCATGATGTCATAATTCAGTCTTACACGGGTTCAGGGAAGACATTGGCTTATCTTCTTCCTATACTATCATCTATTGCTCCACTGATGAACAAAGTTTCCAAGAGTTCCAGTGGTGGTGATTCTGGTGGGAAAATGGGAATAGAAGCAGTGGTTGTTGCTTCCTCTAGGGAGCTAGGGATGCAGATAGAAGAAACTCTCAAGAAGAATAAACCTGCCATTATTGTTGGCACACCTGGAAGGATAGCGGAACATAGTGCAGCAAGAAAGCTTTGGACACATGGCTGTCGTTATTTGGTATTGGATGAAGTTGATGAGCTCTTGTCATTCAATTTTCGGGAGGACATGCACCGGATATTGCAGCATGTAGGCAGGAGATCAGAGCAGCGAGAAGCTGGGGATGTGATCCACTTCTTGTCCAAGCTAAACCCAACTAAGCCATCTCAGGCATCAGTAGAGAGTTTGCCTCTGGCTTTGAAATACTATTACTGTGCAGCGAGGTTACAGCACAAGGTTGATACCATGAGAAAGTGTATTCATGCCCTGGATGCAAAAGTTATAATAGCTTTCATGAACAACACTAAGCAACTAAAGGATGACATCTTCAAGCTGGAGGCCCGTGGAATGAAAGCGGCAGAGTTGCATGGGGATCTTGGGAAGCTTGCTAGGTCATCAACTTTGAAGAAATTCAAGAATGACGAGGTGAGAGTTCTGGTGACAAATGAATTATTAGCTAGAGATTTAGATGTGGTAGAATGTGATCTCGTGGTTAATCTGGACTTACCTACGGATTCAACTCACTATGCACACCGAGCAGGCCGAACTGGTCGGCTTGGTAAGGATGGTACAGTGCTAACCATATGTGAAGAGTGCAAAGTGTTTATTGTAAAGAAAATGGAGAAGCATCTTGGAGTAACTGTAGCATTCTGCAATTTTGTTGAGGGAAAGATGCTTGTCAACCAAGAAGAGAAAGCACTCAGCACTTCAAGAAAATGA 1719 0.4549 MRLELRNPHVTAPRASLSVFTALQAPPSLGLVSSATVESLRLEHCHLRLANVAADPPSFSPSSVFSTSSFPALPFVVKFTSMLPALMPSRFLLLVGESFPIRKALVTHKNTSSLLHTSIHCKSQVEPPNHGSLTLSSVSFQSEVDKPINKGGKSSSKVKPLLGSSPGSLKSKGIGKPIGSSEKKKAFGIVDRKKQQIKAAPFAVKSFSELGLPLVLIERLEKEGISVPTGVQSVAVPTILQNHDVIIQSYTGSGKTLAYLLPILSSIAPLMNKVSKSSSGGDSGGKMGIEAVVVASSRELGMQIEETLKKNKPAIIVGTPGRIAEHSAARKLWTHGCRYLVLDEVDELLSFNFREDMHRILQHVGRRSEQREAGDVIHFLSKLNPTKPSQASVESLPLALKYYYCAARLQHKVDTMRKCIHALDAKVIIAFMNNTKQLKDDIFKLEARGMKAAELHGDLGKLARSSTLKKFKNDEVRVLVTNELLARDLDVVECDLVVNLDLPTDSTHYAHRAGRTGRLGKDGTVLTICEECKVFIVKKMEKHLGVTVAFCNFVEGKMLVNQEEKALSTSRK 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02682 572 CDD SF2_C_DEAD 401 529 - -
Aip06g02682 572 Pfam Helicase conserved C-terminal domain 418 520 IPR001650 -
Aip06g02682 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 399 554 IPR027417 -
Aip06g02682 572 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 305 548 - -
Aip06g02682 572 Gene3D - 398 554 IPR027417 -
Aip06g02682 572 SMART helicmild6 440 520 IPR001650 -
Aip06g02682 572 MobiDBLite consensus disorder prediction 146 176 - -
Aip06g02682 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 538 IPR027417 -
Aip06g02682 572 CDD DEADc 216 367 - -
Aip06g02682 572 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 415 559 IPR001650 -
Aip06g02682 572 Pfam DEAD/DEAH box helicase 230 311 IPR011545 GO:0003676|GO:0005524
Aip06g02682 572 Gene3D - 310 381 IPR027417 -
Aip06g02682 572 Gene3D - 180 309 IPR027417 -
Aip06g02682 572 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 236 361 IPR014001 -
Aip06g02682 572 SMART ultradead3 224 403 IPR014001 -
Aip06g02682 572 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 205 233 IPR014014 GO:0003724
Aip06g02682 572 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 305 548 - -
Aip06g02682 572 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 104 305 - -
Aip06g02682 572 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 104 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02682 Aip-Chr6 116682054 116685196 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02682 204 548 Eukaryotic Initiation Factors Gene Family AT3G19760 24.474 2.06e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02682 - - aip:107613119 754.977