Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02680 ATGAACAAAGTTTCCAAGAGTTACAGTGGTGGTAATTCTGGTGAGAAAATGGGAGTAGAAGCAGTGGTTGTTGCTCCCTCTAGGGAGCTAGGGATGCAGATAGAAGAAGCTCTCAAGAAGAATAAACATGCCATTGTTGTTGGCACACCTGGAAGGATAGCGAAACTTAGTGCAGCAGGGAAGCTTTGGACACATGGCGGTCGCTATTTGGTATTGGATGAAGTTGATGAGCTCTTGTCATTCAATTTTCGGGTGGACATGCACCGGATATTGCAGCATGTAGGCAGGAGATCAGGCCCTATCAATTTGTCAAGGCCTTCAGTCGGTTCTACTCCAGACCCAACTAAGCCATCTCAGGCATCAGTAGAGAGTTTGCCTCTGTTTTTGAAACACTATTACTGTGTAGCGAGGTTACAGCACAAGGTCGATACCATGAGAAAGTGTATTCATGCCCTGGATGCAAAAGTTGTAATAGCTTTCATGAACAACACTAAGCAACTAAAGGATGTCGTCTTCAAGCTGGAGGCCCGTGGAATGAAAGCGACAGAGTTGCATGGGGATCTTGGGAAGCTTGCTAGGTCGTCAACTTTGAAGAAATTCAAGAATGACGAGGTGAGAGTTCTTGTGACAAATGAATTATCAGCTAGAGGTTTGGATGTGGCAGAATGTGATCTCGTGGTTAATCTGGACTTACCTACGGATTCAAGTCACTATGCACACCGAGCATGCCGAACTAGTCAGCTTGGTAGGGATGGTATAGTGCTAACCATATGTGAAGAGTCCGAAGTGTTTATTGTGAAGAAAATGGAGAAGTAG 816 0.4498 MNKVSKSYSGGNSGEKMGVEAVVVAPSRELGMQIEEALKKNKHAIVVGTPGRIAKLSAAGKLWTHGGRYLVLDEVDELLSFNFRVDMHRILQHVGRRSGPINLSRPSVGSTPDPTKPSQASVESLPLFLKHYYCVARLQHKVDTMRKCIHALDAKVVIAFMNNTKQLKDVVFKLEARGMKATELHGDLGKLARSSTLKKFKNDEVRVLVTNELSARGLDVAECDLVVNLDLPTDSSHYAHRACRTSQLGRDGIVLTICEESEVFIVKKMEK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02680 271 Pfam DEAD/DEAH box helicase 41 98 IPR011545 GO:0003676|GO:0005524
Aip06g02680 271 Gene3D - 35 104 IPR027417 -
Aip06g02680 271 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 35 271 - -
Aip06g02680 271 CDD SF2_C_DEAD 129 258 - -
Aip06g02680 271 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 144 271 IPR001650 -
Aip06g02680 271 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 35 271 - -
Aip06g02680 271 Pfam Helicase conserved C-terminal domain 147 246 IPR001650 -
Aip06g02680 271 SMART helicmild6 168 252 IPR001650 -
Aip06g02680 271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 270 IPR027417 -
Aip06g02680 271 Gene3D - 128 271 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02680 Aip-Chr6 116657501 116658562 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02680 19 271 Eukaryotic Initiation Factors Gene Family AT3G19760 25.597 5.98e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02680 - - pda:103723520 345.895