LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip06g02679	ATGGTACCACAAATGGGAGGGCTAAAGAAGAAGACGACGAAACAACAGAGTTCGGAGAAGAGGGTGGCGGGTCGGCCGCGACGCTGCTCCACCTTCTCTTGGTCTCATGAGTTCTGCCACCGTCGAGTCTCTCCGTCTCAAGCATTGCCACCTTTGTCTAGCCAAGATCGCGGCCGACCCGCCATCCTCTTCTCTGAGTTCTGTTGTATCGCCGTCCTCTTCTCCAGCCCTCCCCTAGTGGTTTGTCAATTTTTCTTTATTTGTTTCGTGTTGTCTATTCAAAGAGTCAATTTAATTTCTAATCAGAATTTTGATACGAGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAACTTGCTGCTAGGATTATTGTTGCAATTGAAAACCCGCAGGATATCATTGTTCAGTCTACTAGGCCATATGGTCAGAGAGTTGTCCTTAAGTTTGCACAATACACTGGTGTGAATGCAATTGCTGGAAGGCACACTCCTGGAACATTCACTAATCAAATGAAACATCCTATAACGAGCCTCGTCTACTCATTCTGA	558	0.4588	MVPQMGGLKKKTTKQQSSEKRVAGRPRRCSTFSWSHEFCHRRVSPSQALPPLSSQDRGRPAILFSEFCCIAVLFSSPPLVVCQFFFICFVLSIQRVNLISNQNFDTSIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSTRPYGQRVVLKFAQYTGVNAIAGRHTPGTFTNQMKHPITSLVYSF	185

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip06g02679	185	SUPERFAMILY	Ribosomal protein S2	106	176	IPR023591	-
	Aip06g02679	185	PANTHER	40S RIBOSOMAL PROTEIN SA	108	175	-	-
	Aip06g02679	185	MobiDBLite	consensus disorder prediction	1	27	-	-
	Aip06g02679	185	Pfam	Ribosomal protein S2	106	173	IPR001865	GO:0003735\|GO:0005840\|GO:0006412
	Aip06g02679	185	PANTHER	40S RIBOSOMAL PROTEIN SA	108	175	IPR005707	GO:0003735\|GO:0006412\|GO:0015935
	Aip06g02679	185	PRINTS	Ribosomal protein S2 signature	107	116	IPR001865	GO:0003735\|GO:0005840\|GO:0006412
	Aip06g02679	185	PRINTS	Ribosomal protein S2 signature	156	173	IPR001865	GO:0003735\|GO:0005840\|GO:0006412
	Aip06g02679	185	CDD	RPS2	108	173	IPR001865	GO:0003735\|GO:0005840\|GO:0006412
	Aip06g02679	185	Gene3D	-	97	181	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip06g02679	Aip-Chr6	116650945	116654129	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip06g02679	105	175	Cytoplasmic Ribosomal Protein Gene Family	AT3G04770	87.324	5.17e-41	138

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip06g02679	K02998		-	aip:107647299	159.073