Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02677 ATGCCGGCGAAGAATCTCATGGCGGAGAGGCGGCGCAGGAAGAAGCTTAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGATAGGGCTTCGATACTTGGGGATGCAATCGACTACTTGAGGGAGTTACTGCAGCGGATTAATGATCTTCACAATGAACTGGAGTCAACTCCACCTGGCTCTTCGCTGCAATCTTCCACCACCAGCCTTCAACCTTTGACACCCACGCCGCAAACCCTTCCGTGCCGGGTGAAGGAGGAACTGTATCCTGGCGTCTTGCCAAGCCCCAAAAACCAACCTGCAAAGGTGGAAGTTAGGGTGAGGGAAGGGAGAGCTGTCAACATTCATATGTTTTGTACTCGCCGACCAGGTCTTCTGCTCTCAACCATGCGGGCTCTGGATAGTTTTATGATCCTTTCCCCCAATTTTGTTTGGGCATTCCAAATGCAATGCAGAGAAGGGCAGGATGTTCTTCCTGAGGAAATCAAAGCAGTGCTGCTGGATTCAGCAGGGATCCATGACATGATGTGA 549 0.5027 MPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLRELLQRINDLHNELESTPPGSSLQSSTTSLQPLTPTPQTLPCRVKEELYPGVLPSPKNQPAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDSFMILSPNFVWAFQMQCREGQDVLPEEIKAVLLDSAGIHDMM 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02677 182 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Aip06g02677 182 PANTHER BHLH TRANSCRIPTIONAL FACTOR 1 182 - -
Aip06g02677 182 Gene3D - 3 64 IPR036638 GO:0046983
Aip06g02677 182 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 70 IPR036638 GO:0046983
Aip06g02677 182 SMART finulus 6 55 IPR011598 GO:0046983
Aip06g02677 182 MobiDBLite consensus disorder prediction 58 83 - -
Aip06g02677 182 CDD bHLH_AtAMS_like 3 66 - -
Aip06g02677 182 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 182 - -
Aip06g02677 182 Pfam Helix-loop-helix DNA-binding domain 7 49 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02677 Aip-Chr6 116616106 116618631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02677 1 141 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 85.106 4.60e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip06g02677 HLH 6.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02677 - - aip:107647300 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02677 06 116616106 116618631 Aip06g02677 06 116616106 116618631 ECH