Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02646 ATGTCGGTGCAGCGCAGAGCCAGTGCGAGAATCCAAGCGGCGAAGCAGAAGGCAGAGGAGGAGCTTCAAGCTCGCCGTGGAGCGGTGGTAGTAGAAGAAGAGAAAGAAAAAGAGGAGAAACGTGTGAAAGTGGCGAAGAAGTGGAGCAAGAAGCGCGTGAGGAATGGGGAGTACTTGGGAGAGGGAGAGGTTGTTGTTGGTGGTGCTTCCCCAAAGAAGGGGAACAATGACAGCGGAAACGAGGAGGGTGTTGGCGAGGGAGAGGGAGGTGTTGCTCCTTCCTCGGCGAAGAAGCCGAAGAGGCGGCCGTTTATGCAGGATCAAAATGGAGTAGGGGATTCTGAGAATGCTGTGGCTAATTCTGCTGAAAATAAAGGAGCTGCCTTAAGGGTGAAGGAGACTATTAGGGTCTACAACAAGCATTACCTTCATTTTGTTCAGGAGGAAGAGAAGAGGTGTGGGAAAGCGAAGGCTGAATCTGAAGCTGCTAAGAAGTCAAAGTCTTCAAAATCGAAGAAAGGGGGACCACTTGAAGTTAAGAAAACTCATCAACGACCTGATCTAAAGGCACTATCCATGATGATGACGAATAATGAGATTTTGTACCCTGAGAAAAGAATTGGTGACCTTCCAGGTATTGAAGCTGGACATCAGTTCTTTTCTCGAGGTGAAATGGTTGCTGTTGGTTTTCATAGTCATTGGTTAAATGGCATTGATTATATGGGCAAATCCTATGACAAAAACAGCATTTATGAATACCCTATTGCCGTGGCCATTGTTTTGTCGGGCCAGTATGAAGATGATGTTGATAATGCTGATGATGTTGTGTATACTGGTCAAGGTGGGCATAACTTGACAGGTGATAAGCGCCAAATCAAAGACCAAAAGTTGGAGCGGGGTAACTTAGCACTCAAGAATTGTATAGAGCAAGATGTGCCTGTTAGAGTGATCCGTGGTCATAAATCTTCAAATGGTAAATCTTCAAACGGTAAATCTTCAAATGGTGCTACTAAAATCTATACATATGATGGCTTGTACAAGGGAATATCTGGATTTACAGTCTACAAATTTCAACTTAAGAGAATTGAAGGGCAGCCATTAATGACCACAAATCAGGTTTATTTCACTCGTGGACGTGTACCACAGTCTACTGCAGAAATACGAGGGTTGGTATGTGAGGATATAACTGGAGGTCAAGAAAATATTCCAATTCCTGCTACAAATTTGGTTGATGATCCCCCTGTTGCACCAACGGGTTTTACGTATTGCAACTCTGTTAAGGTTGCAAAAAATGTGAAGTTTCCCAAGGCTGCCACTGGATGCAAGTGCAAGGGTGTCTGCATTGATTCTACGACATGTGAATGTGCATTGCGTAATGGCTCTGAATTTCCCTACGTAGCTCAAAATGGTGGCAGGTTAGTTGAAGCTAAAGATGTTGTCTTTGAATGTGGTCCCAACTGTGGCTGTGATGAGACTTGTGTGAACCGGACTTCGCAGAAAGGGATTCGATATCGTCTGGAGGTTTTCCGTACTGCAAAGAAAGGGTGGGCTGTTAGATCATGGGATTTTATACCAGCTGGTGCACCAGTTTGTGAGTACACAGGAATACTTGCTAGGACTGAAGATATGGACAGTGTATTAGAGAATAATTATATTTTTGAGATAGATTGCTTACAGACAATCAAGGGTCTTGGTGGAAGAGAGAGGCGATCGCAAAGTGGTACATTTCCATCAAATCTTTTGGATAAATATGATGACCATGGTTCAGATGGTGCACCAGAATACTGTATCGATGCTGGACCTACTGGAAATATTGCCAGGTTTATAAACCACTGTTGTGAGCCTAATTTGTTTGTTCAATGTGTCTTGAGCACCCACCATAACTTGAAATTTGCAAGGGTAGTGCTGTTTGCTGCTGACAACATACCCCCACTGCAGGAGCTGACGTATGACTATGGTTATGAGCTTGATAGTGTATTGGGTCCCGATGGAAAGGTCAAACAAGTGACATGCTATTGTGGAGCTCCAGGTTGCAGGAAGCGATTATTCTAA 2052 0.4415 MSVQRRASARIQAAKQKAEEELQARRGAVVVEEEKEKEEKRVKVAKKWSKKRVRNGEYLGEGEVVVGGASPKKGNNDSGNEEGVGEGEGGVAPSSAKKPKRRPFMQDQNGVGDSENAVANSAENKGAALRVKETIRVYNKHYLHFVQEEEKRCGKAKAESEAAKKSKSSKSKKGGPLEVKKTHQRPDLKALSMMMTNNEILYPEKRIGDLPGIEAGHQFFSRGEMVAVGFHSHWLNGIDYMGKSYDKNSIYEYPIAVAIVLSGQYEDDVDNADDVVYTGQGGHNLTGDKRQIKDQKLERGNLALKNCIEQDVPVRVIRGHKSSNGKSSNGKSSNGATKIYTYDGLYKGISGFTVYKFQLKRIEGQPLMTTNQVYFTRGRVPQSTAEIRGLVCEDITGGQENIPIPATNLVDDPPVAPTGFTYCNSVKVAKNVKFPKAATGCKCKGVCIDSTTCECALRNGSEFPYVAQNGGRLVEAKDVVFECGPNCGCDETCVNRTSQKGIRYRLEVFRTAKKGWAVRSWDFIPAGAPVCEYTGILARTEDMDSVLENNYIFEIDCLQTIKGLGGRERRSQSGTFPSNLLDKYDDHGSDGAPEYCIDAGPTGNIARFINHCCEPNLFVQCVLSTHHNLKFARVVLFAADNIPPLQELTYDYGYELDSVLGPDGKVKQVTCYCGAPGCRKRLF 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02646 683 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 3 682 - -
Aip06g02646 683 SUPERFAMILY PUA domain-like 190 382 IPR015947 -
Aip06g02646 683 ProSiteProfiles YDG domain profile. 208 361 IPR003105 -
Aip06g02646 683 SMART PostSET_3 667 683 IPR003616 -
Aip06g02646 683 Coils Coil 146 166 - -
Aip06g02646 683 MobiDBLite consensus disorder prediction 157 186 - -
Aip06g02646 683 Pfam Pre-SET motif 396 496 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip06g02646 683 ProSiteProfiles Pre-SET domain profile. 439 501 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip06g02646 683 SMART set_7 504 659 IPR001214 GO:0005515
Aip06g02646 683 MobiDBLite consensus disorder prediction 1 25 - -
Aip06g02646 683 SUPERFAMILY SET domain 389 660 IPR046341 -
Aip06g02646 683 SMART preset_2 392 488 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip06g02646 683 SMART G9a_1 203 365 IPR003105 -
Aip06g02646 683 Coils Coil 4 24 - -
Aip06g02646 683 MobiDBLite consensus disorder prediction 59 119 - -
Aip06g02646 683 Pfam SET domain 515 653 IPR001214 GO:0005515
Aip06g02646 683 ProSiteProfiles Post-SET domain profile. 667 683 IPR003616 -
Aip06g02646 683 Gene3D - 191 378 IPR036987 -
Aip06g02646 683 ProSiteProfiles SET domain profile. 504 653 IPR001214 GO:0005515
Aip06g02646 683 Pfam SAD/SRA domain 207 365 IPR003105 -
Aip06g02646 683 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 20 683 IPR025794 GO:0016571
Aip06g02646 683 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 3 682 - -
Aip06g02646 683 Gene3D SET domain 387 683 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02646 Aip-Chr6 116160829 116174615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02646 194 683 EF-hand Containing Proteins AT5G13960 65.339 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip06g02646 SAD_SRA 5.9e-41 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02646 K11420 - gmx:100795584 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02646 06 116160829 116174615 Aip06g02646 06 116160829 116174615 ECH