Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02645 ATGGAATTTTCCATGGATGATAGAAGCCAGTCATCAAATAATGATCAACTTTTCATTCTTTGTAGGTATCATCAAATCAAAGAGAAGAAGGTAAGTGAGGAAGCTAATAAGGTGGATCGAAGGCATGGGAAGAGGCCTCTTCCTTCTGATTCTACATCAGAAGAGAAAAGAAGAGAAGAAGAAGATGATTGTTTTCCCAACAACTTTCCTCTTCAGCCACCTTCACAATCTGAAATCCAAAAACAAGAAGAGGAAGAACCTTCACCAAATCTTCAAATAGTTCAGCTCCAAGACCAAGGCAAGAAGGATGTGAGGAAACGACATTATAGAGGAGTAAGGCAGAGACCATGGGGAAAATGGGCAGCCGAAATCAGAGACCCTAAAAAGGCGGCAAGAGTTTGGTTAGGAACCTTTGACACTGCAGAAGCCGCAGCAGCAGCGTACGATTCTGCTGCCTTAAAATTCAAAGGTAACAAAGCCAAACTCAATTTTCCTGAGCGCGTTGCTGCTTCCAATTCGGCTTCAACAACTTATCATCACTCTTCACAACCACCACCTACTATGGTGTATCGACCTTCTTCACAACCTTATACTCCATTAATGCCGCCGCCGCCGCCGTCCTCCTCCGCATCGGAGGAAGGAGGATTTCCAAACCTAATGCAATATGCGCAGTTGCTTTGGAGTAGAGACGATGATGATCTACAACGTGCAGCTTCAGGGCTTTATCATCAGAATAATAATAATAATAATAATTACAGTAACAATTTTTCTTCATATGGTTCTGTAATGAATTCATCATCAGGGTTGTCTTCTTCTTCTTCTACTACTTCAGATTCTGCGGTTGTGATGACTGGTCAACCCCATAGCATGATGGGTGCACCACCACGACCACCCAAGGGAGATTATGATTATTATTTTGGTCAAGGGACTGGTTTTGATGGCAGGAATTGA 951 0.428 MEFSMDDRSQSSNNDQLFILCRYHQIKEKKVSEEANKVDRRHGKRPLPSDSTSEEKRREEEDDCFPNNFPLQPPSQSEIQKQEEEEPSPNLQIVQLQDQGKKDVRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDSAALKFKGNKAKLNFPERVAASNSASTTYHHSSQPPPTMVYRPSSQPYTPLMPPPPPSSSASEEGGFPNLMQYAQLLWSRDDDDLQRAASGLYHQNNNNNNNYSNNFSSYGSVMNSSSGLSSSSSTTSDSAVVMTGQPHSMMGAPPRPPKGDYDYYFGQGTGFDGRN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02645 316 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Aip06g02645 316 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 100 281 - -
Aip06g02645 316 MobiDBLite consensus disorder prediction 189 210 - -
Aip06g02645 316 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Aip06g02645 316 MobiDBLite consensus disorder prediction 30 65 - -
Aip06g02645 316 MobiDBLite consensus disorder prediction 173 215 - -
Aip06g02645 316 MobiDBLite consensus disorder prediction 173 188 - -
Aip06g02645 316 SUPERFAMILY DNA-binding domain 108 166 IPR016177 GO:0003677
Aip06g02645 316 MobiDBLite consensus disorder prediction 263 284 - -
Aip06g02645 316 MobiDBLite consensus disorder prediction 263 316 - -
Aip06g02645 316 MobiDBLite consensus disorder prediction 30 110 - -
Aip06g02645 316 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Aip06g02645 316 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Aip06g02645 316 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Aip06g02645 316 CDD AP2 108 166 IPR001471 GO:0003700|GO:0006355
Aip06g02645 316 Gene3D AP2/ERF domain 107 167 IPR036955 GO:0003700|GO:0006355
Aip06g02645 316 PANTHER DNA-BINDING DOMAIN 100 281 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02645 Aip-Chr6 116036805 116044233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02645 89 185 AP2-EREBP Transcription Factor Family AT5G61890 72.449 4.83e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip06g02645 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02645 - - aip:107647314 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02645 06 116036805 116044233 Aip08g03293 08 123956891 123959146 ECH
Aip06g02645 06 116036805 116044233 Aip06g02645 06 116036805 116044233 ECH