Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02613 ATGATCTCCTCACTCTCGCTCTTCAGCTGCCACTTCCCATTTCCCAATTCGTCCAACTTCAAACTCATTCACAACTCAAACCTTCTAACCATTTTCATTTCCTTTTTCTTTTTTGCCTTCATCATCACCCTCCTATTCTCTTTTTCTTCTTCAGCAATGAGTTTCCAAGATATCCAAGGCGGCCCTAACGCAGCCGTGCGAAGAAGCCAGTCTCCGTCGCAGGTCATCGCCGCCGGAATCTTCCAGATCAACACTTCCGTCGCCACTTTCCGCCGCCTCGTTGATTCTCTTGGAACCGTTAAAGACACTCCCGACCACCGCCAGAAGCTGCACAACACGAGACAGAGGATATTGAAGCTGGTGAAGGATATTTCTGCTAAGCTCAAGTCGTTGAGTGAATCTGATCGCCATGCTTCTGGTGCCAATGCTAACAAGAAAATTGAAGATGCTAAGCTAGCAAGAGATTTCCAAACCACATTGCAGGAATTCCAGAAAGTGCAGCAGCTTGCATCCGAGCGCGAATCGACTTACACCCCTACTACTGCCCCTCCGCCTTCTTTTCCAACAAGCTCTGGCTCTGGTGAAGAATCCGGTGAGAGAGACCAGGAAAGCCAACCTTTTATGAGGGAGCAAAGAAGGCAAGAGGTACTTCTCTTGGATAATGAAATCTCCTTCAATGAGGCCATGATTGAAGAAAGAGAACAGGGTATTAGAGAGGTAGAAGAACAAATCGGACAAGCAAATGACATATTCAAGGACCTGGCTGTTCTTGTTCATGACCAAGGGGTTGTTATTGATGACATTCAATCGAACATCGATAATTCTGCTGGTGCAACAACCCAAGCGAGAGTTCAGTTAGCAAAAGCTTCCAAAAGTGTGAAATCTAGAACCTCATGGTGTTGGTGGGTGCTTGTAATTTTTGTGGTGATTGTGGTGATCGTACTTGTTGTACTGATTATTTAG 963 0.459 MISSLSLFSCHFPFPNSSNFKLIHNSNLLTIFISFFFFAFIITLLFSFSSSAMSFQDIQGGPNAAVRRSQSPSQVIAAGIFQINTSVATFRRLVDSLGTVKDTPDHRQKLHNTRQRILKLVKDISAKLKSLSESDRHASGANANKKIEDAKLARDFQTTLQEFQKVQQLASERESTYTPTTAPPPSFPTSSGSGEESGERDQESQPFMREQRRQEVLLLDNEISFNEAMIEEREQGIREVEEQIGQANDIFKDLAVLVHDQGVVIDDIQSNIDNSAGATTQARVQLAKASKSVKSRTSWCWWVLVIFVVIVVIVLVVLII 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02613 320 Pfam SNARE domain 264 315 IPR000727 -
Aip06g02613 320 Gene3D - 62 181 - -
Aip06g02613 320 Gene3D - 221 320 - -
Aip06g02613 320 SMART tSNARE_6 222 289 IPR000727 -
Aip06g02613 320 SMART SynN_4 60 175 IPR006011 GO:0016020
Aip06g02613 320 MobiDBLite consensus disorder prediction 165 209 - -
Aip06g02613 320 MobiDBLite consensus disorder prediction 165 180 - -
Aip06g02613 320 PANTHER SYNTAXIN 67 319 IPR045242 -
Aip06g02613 320 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 227 289 IPR000727 -
Aip06g02613 320 Pfam Syntaxin-like protein 76 177 IPR006011 GO:0016020
Aip06g02613 320 PANTHER SYNTAXIN-22-LIKE 67 319 - -
Aip06g02613 320 SUPERFAMILY t-snare proteins 72 282 IPR010989 GO:0016020|GO:0016192
Aip06g02613 320 CDD SNARE_Qa 230 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02613 Aip-Chr6 114982929 114985409 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02613 53 307 SNARE and Associated Proteins AT5G46860 57.529 4.14e-97 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02613 - K08488 aip:107604899 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02613 06 114982929 114985409 Aip06g02613 06 114982929 114985409 ECH