Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02612 ATGGTGATAGCGGCAGAGAGGGTGGGATTTGCTGCAAAGGCATCTAATGGAAGACCATCTGTTCTTGAGACAATGGTTCAGTTTGCGATTGGGAAGGCGTGTGAAGAGGAAAAATGGATGGCGGAGATTCGCGATCCAAGAAAAGGTGTTCGCGTTTGGCTTGGAACGTTCAACACCACCAAAGAAGCCGCCAGAGCCTATGACAGAGAATGTCGTAAGATTCACGGAAAGAAAGTTAAAGTGAACTTTCCCAACAAGGATGACAAACACTCCATTCAACAATCTCGCAACATTATTCTAAACCTTCCTCCTCTTCCCATTTGA 324 0.4568 MVIAAERVGFAAKASNGRPSVLETMVQFAIGKACEEEKWMAEIRDPRKGVRVWLGTFNTTKEAARAYDRECRKIHGKKVKVNFPNKDDKHSIQQSRNIILNLPPLPI 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02612 107 SMART rav1_2 38 90 IPR001471 GO:0003700|GO:0006355
Aip06g02612 107 CDD AP2 38 85 IPR001471 GO:0003700|GO:0006355
Aip06g02612 107 Gene3D AP2/ERF domain 32 86 IPR036955 GO:0003700|GO:0006355
Aip06g02612 107 SUPERFAMILY DNA-binding domain 36 85 IPR016177 GO:0003677
Aip06g02612 107 PANTHER DNA-BINDING DOMAIN 38 98 IPR044808 GO:0003700|GO:0009873
Aip06g02612 107 Pfam AP2 domain 37 69 IPR001471 GO:0003700|GO:0006355
Aip06g02612 107 PANTHER EREBP TRANSCRIPTION FACTOR 38 98 - -
Aip06g02612 107 ProSiteProfiles AP2/ERF domain profile. 26 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02612 Aip-Chr6 114981994 114982317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02612 38 86 AP2-EREBP Transcription Factor Family AT1G72360 71.429 4.10e-20 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip06g02612 AP2 7.7e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02612 K09286 - gmx:100819416 108.227