LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip06g02551	atggaatccatcaattatgCACACAAATCAAACCTAGCATTCCTCACCCTTCTTCTCCGTCAACGACTCAACGGGCTACTTCTTCTTCTCCTTTCTTCACCCACAACGTCACCGCCGGCCACCCTAACTGCCGCAGCCACCTTCTTGTCTCTTTTCATAGCAAATGCAGCTTCCGGAATGGCGGTCCATGATGACTGCAAGTTGCGGTTTTTGGAGCTCAAGACAAAAAGGACTCACAGGTTCATAGTTTTCAAGATTGAGGAGAATCAAAAGCAAGTCATTGTGGAGAAGCTTGTTCTTATCCGAAGGCAATGTCCCCAAGAGCAGGATTTTCTTCATTGCTTGTTGCAGTTGGAAATGTACTTGTTGGAGAGCAAGGCGGGTGCCATAGTTTGCGTGCTTTTGTCCCTTTTCTTCTTGGGGACATGGCCTTCTATCTTGACTTTGTTAGAGAGGCGATGGCATCTTCCTCAGCATACTTATCTTGATTACTCGCTCACCAATTTTCTTGCTGCTCTTTTCATTGCATTCACAGTTGGTGAGATAGGCAAGAGCACACCAAGTGAGCCAAATTTTTTAGCTCAACTTGCTCAGGATAATTGGCCCTCTGTTCTGTTTGCAATGGGGGGTGGTGTAGTCCTAAGCCTTGGGAATCTGGCCTCGCAATATGCTTTTGCTTTTGTTGGGCTGTCAATTACTGAAGTCATCACTGCAAGCATAACTGTTGTTATAGGCACAAGCTTGAATTACTTTTTGGATGGAAAAATCAATAGAGCTGAGATTCTTTTTCCTGGAGTTGGTTGCTTTCTGATTGCAGTTTGTCTAGGTTCTGATGTTCATTCTTCGAATACTGCTGATAATAAAGTCAAGCTCAGCAATTTATCAAGTGATTATAACGCTGGATCAGTGGACTCTTTCACAGAGGGAGGTCTTGACGTGATTTGCACTGATAGGACATTGGTCTTTTATGAGAAGCAAGAGAACTTGTCAAAATTATGGGATATTCTTGCAATTTATGCTTGGCTAGATAAAGATGTTGTCTATGGTCAAGGAGATGATGGTTTCAGAATGAATGAAGTGCTTGTGTCATTGTTGCCAAAGATGTTCATGGAAATTCCTGAAAGTTTAGGCACATCTATAGAGGTGCACCTATTGACCACTGGATGGAGCAATTTTGTGATCCAGAAGAAGCTTGTAGCTGGTGATTCCATTGTGTTCTTGAGAGCTAAGGATGGTGATCTGTGTGTTGGGATACAGAGGGCCAAGAAGGTGGTAGTTGGAGGTGGCGAGGTGTCGGTGTCATTGGTGGTTGAAGCTGTGAGTTGTGGTGTTAATGGAAGGCCATTTGAGGTTGTGTACTATCCAAGGGGAAGCTCACCTGAGTTTTGTGTTAAGGCCTCAATTGTGAGAGATGCAATGAAAGTGAGGTGGTGTTTTGGGATGAGCTTCTTGATCCCATTCATTGGCCTAATTCTCCATGGCGTCTTCTACAGGCACCTATTGACCACTGGATGGAGCAATTTTGTGATCCAGAAGAAGCTTGTAGCTGGTGATTCCATTGTGTTCTTGAGAGCTAAGGATGGTGATCTGTGTGTTGGGATACAGAGGGCCAAGAAGGTGGTAGTTGGAGGTGGCGAGGTGTCGGTGTCATTGGTGGTTGAAGCTGTGAGTTGTGGTGTTAATGGAAGGCCATTTGAGGTTGTGTACTATCCAAGGGGAAGCTCACCTGAGTTTTGTGTTAAGGCCTCAATTGTGAGAGATGCAATGAAACTTCTTGATCCCATTCATTGGCCTAATTCTCCATGGCGTCTTCTACAGGTAGACATCCTCTGCTCAGAAAGTGGGAAGCAGCGAATAATTTACATGTTCCTAATGAGAGATAGACTGCCTCAATCGGATATACATTCGGCGGCGGCATGTTCGAGATGA	1929	0.4427	MESINYAHKSNLAFLTLLLRQRLNGLLLLLLSSPTTSPPATLTAAATFLSLFIANAASGMAVHDDCKLRFLELKTKRTHRFIVFKIEENQKQVIVEKLVLIRRQCPQEQDFLHCLLQLEMYLLESKAGAIVCVLLSLFFLGTWPSILTLLERRWHLPQHTYLDYSLTNFLAALFIAFTVGEIGKSTPSEPNFLAQLAQDNWPSVLFAMGGGVVLSLGNLASQYAFAFVGLSITEVITASITVVIGTSLNYFLDGKINRAEILFPGVGCFLIAVCLGSDVHSSNTADNKVKLSNLSSDYNAGSVDSFTEGGLDVICTDRTLVFYEKQENLSKLWDILAIYAWLDKDVVYGQGDDGFRMNEVLVSLLPKMFMEIPESLGTSIEVHLLTTGWSNFVIQKKLVAGDSIVFLRAKDGDLCVGIQRAKKVVVGGGEVSVSLVVEAVSCGVNGRPFEVVYYPRGSSPEFCVKASIVRDAMKVRWCFGMSFLIPFIGLILHGVFYRHLLTTGWSNFVIQKKLVAGDSIVFLRAKDGDLCVGIQRAKKVVVGGGEVSVSLVVEAVSCGVNGRPFEVVYYPRGSSPEFCVKASIVRDAMKLLDPIHWPNSPWRLLQVDILCSESGKQRIIYMFLMRDRLPQSDIHSAAACSR	642

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip06g02551	642	Gene3D	-	454	538	IPR015300	-
	Aip06g02551	642	Gene3D	-	343	422	IPR015300	-
	Aip06g02551	642	PANTHER	UREIDE PERMEASE 1-LIKE	110	304	-	-
	Aip06g02551	642	ProSiteProfiles	B3 DNA-binding domain profile.	385	422	IPR003340	GO:0003677
	Aip06g02551	642	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	310	365	IPR035969	-
	Aip06g02551	642	SUPERFAMILY	Actin depolymerizing proteins	54	99	-	-
	Aip06g02551	642	PANTHER	UREIDE PERMEASE 1-RELATED-RELATED	110	304	IPR030189	GO:0016021\|GO:0022857\|GO:0071705
	Aip06g02551	642	SUPERFAMILY	DNA-binding pseudobarrel domain	382	421	IPR015300	-
	Aip06g02551	642	Gene3D	Severin	52	119	IPR029006	-
	Aip06g02551	642	Pfam	Ureide permease	160	305	IPR009834	GO:0016021\|GO:0071705
	Aip06g02551	642	SUPERFAMILY	DNA-binding pseudobarrel domain	497	537	IPR015300	-
	Aip06g02551	642	ProSiteProfiles	B3 DNA-binding domain profile.	468	538	IPR003340	GO:0003677
	Aip06g02551	642	Pfam	Auxin response factor	445	485	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip06g02551	Aip-Chr6	112967552	112979456	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip06g02551	491	607	B3 DNA Binding Superfamily	AT4G30080	41.799	2.05e-34	137

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip06g02551	-		-	ahf:112754908	462.611