Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02550 ATGGAAGAGCCTGTGGTAGTTAACAAAGGCGAGGAGCCGCTGGATTTGCCACCAGGTTTCAGATTCCACCCAACAGACGAAGAAATCATCACTTATTACCTCACCGAGAAGGTCATGAACAGCAGCTTCAGTGCAACTGCCATAGGTGAAGCCGATTTGAACAAATCCGAACCCTGGGATTTACCAAAGAAAGCAAAGATGGGAGAGAAGGAGTGGTACTTCTTTTGTCAGAAGGACAGGAAATACCCGACGGGGATGAGGACCAATAGAGCAACGGATTCCGGTTACTGGAAGGCAACCGGAAAAGACAAAGAGATTTTCAAAGGGAAAGGGAATCTCGTTGGGATGAAGAAAACGCTTGTTTTCTACCGAGGTAGAGCTCCCAAGGGTGAAAAGACCAATTGGGTCATGCATGAGTTCAGATTGGAAGGCAAATTTGCCAATTATAACCTCCCCAAGGCTGCAAAGGATGAATGGGTTGTGTCGAGGGTTTTTCACAAGAACACAGATGTAAAGAAGACTACTACCCCATCCTCATCATCATCAATAATTCCTGGCCTTTTGAGGATCAACTCAATAGGCGATGATCTTCTAGATTGTTCCACACTCCCACCTCTCATGGACCCTCACCCTACTCCTCTCGATACAACAAAATCCGACGGCTATTATTTCCCCTCCTTCTCATCATCACATCAGATTCTCAATATCAAGCCCGAAGAACACAACACAAGCCACCAAATTCCCATCACCAACTACCAGATTCCAAATTTCAACACCACACTCTCTTCTTCATCATCTCATCAAATCAGACTACAAAATCATCTCAACTTGTTCTCATCATCATCATCAAATAACAATTACCATAATAGCTCGTGGCCAACCTATTATGATGAGGTCCACCACCATCATCAAGATGATATTCTACTAAGAGCAATCGCGTCAAAGAACTATAGCAACGGAGGAGGAGGCGCCGGCGAGTGCAAGGTGGAGCAATTCTCCTCCGGCAACCAGTCAGTGGTGAGCGTTTCGCAAGAGACGGGGCTGAGCAACGACAGAACCACCAATGACACGTCATCGGTGGTTTCGAAGCAGCAGCATAATAATAGAACATTGTACGAGGATCTTGAAGGTCCTTCTTCATCAGTTGCACCTCTTTCAGATTTGGAATGCTTGTGGGATACCTACTGA 1188 0.4571 MEEPVVVNKGEEPLDLPPGFRFHPTDEEIITYYLTEKVMNSSFSATAIGEADLNKSEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATDSGYWKATGKDKEIFKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFANYNLPKAAKDEWVVSRVFHKNTDVKKTTTPSSSSSIIPGLLRINSIGDDLLDCSTLPPLMDPHPTPLDTTKSDGYYFPSFSSSHQILNIKPEEHNTSHQIPITNYQIPNFNTTLSSSSSHQIRLQNHLNLFSSSSSNNNYHNSSWPTYYDEVHHHHQDDILLRAIASKNYSNGGGGAGECKVEQFSSGNQSVVSVSQETGLSNDRTTNDTSSVVSKQQHNNRTLYEDLEGPSSSVAPLSDLECLWDTY 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02550 395 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Aip06g02550 395 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Aip06g02550 395 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 380 - -
Aip06g02550 395 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Aip06g02550 395 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100-LIKE 3 380 - -
Aip06g02550 395 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Aip06g02550 395 MobiDBLite consensus disorder prediction 338 375 - -
Aip06g02550 395 MobiDBLite consensus disorder prediction 338 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02550 Aip-Chr6 112930315 112932292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02550 2 395 NAC Transcription Factor Family AT3G04060 50.000 1.84e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip06g02550 NAM 1.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02550 - - gmx:100784372 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02550 06 112930315 112932292 Aip06g02550 06 112930315 112932292 ECH