Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02539 ATGAACATGGAGGGTGAGTTCCAGAAAGAGCAACAAGTGCTGCTTGTTGCTGACCCTGCTTCTTGCTCAAAGCTTTCTACTTCTTCAACCACCCTTGATGACCTCTTCTCTGCTCAGAACACGGAAGTGGATGTTGGGTTGGAATGGTTATCAGTGTTTGTTGAAGAATGCTTTTCAAACCCACCAAGCTATATATTGGGACCTTCAAAGAGTGTTGAGGCCACAACCACCACCACCATAACTACCTGCTCCTCCAACAAGAACCCTTCTTCAACCGCACTACTGAAGCAAAACAACAACAATGATTCCTCACTACAAAACTTTTCAGTCCCTAGTAAGGCCAGAAGCAAAAGAAAGAGGCTCTCAGCAGTTACCAACAGACGAAGAACCAAAACTCCTTTCAGCATTTGGTCACACCAAAATGACGAGCCCTTGATTTCAGACCCTCCTCTGTTAAAACAAACTTATTGGTTAGCGGATAGTGAACTCTTTGTTTTGCCAAAGCAGCAGAAGAAGGATAGTGAGAAAGATGTAATAGCCAAAGACGGCGACGACGACGACAAAGACGGCGGTGGCGAAAAGGGGGCGGTGGTGATGAAGAGGGGAAGTCTTGTGAGTCTTGAAGAGTGCTCTGAGGCAGAGGAAGATGGTGATGGTGGGAATAACAATAATAATAATAATAACAATAATGGTGAGAATCCAATGCCAAGAAGGTGCACACATTGTTTGGCACAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGTCCAAAGACGCTATGCAATGCATGTGGGGTGAGGTACAAATCTGGTAGGTTGTTACCTGAGTATAGGCCAGCAAAGAGTCCTACTTTTGTAAGTTACTTGCACTCCAATTCTCACAAGAAAGTTATGGAGATGAGGATGGCTGGCTCTGTTCTCCATTCTTAG 930 0.4548 MNMEGEFQKEQQVLLVADPASCSKLSTSSTTLDDLFSAQNTEVDVGLEWLSVFVEECFSNPPSYILGPSKSVEATTTTTITTCSSNKNPSSTALLKQNNNNDSSLQNFSVPSKARSKRKRLSAVTNRRRTKTPFSIWSHQNDEPLISDPPLLKQTYWLADSELFVLPKQQKKDSEKDVIAKDGDDDDKDGGGEKGAVVMKRGSLVSLEECSEAEEDGDGGNNNNNNNNNNGENPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAGSVLHS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02539 309 MobiDBLite consensus disorder prediction 217 233 - -
Aip06g02539 309 Pfam GATA zinc finger 239 273 IPR000679 GO:0006355|GO:0043565
Aip06g02539 309 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Aip06g02539 309 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 21 303 - -
Aip06g02539 309 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Aip06g02539 309 MobiDBLite consensus disorder prediction 169 233 - -
Aip06g02539 309 ProSiteProfiles GATA-type zinc finger domain profile. 237 269 IPR000679 GO:0006355|GO:0043565
Aip06g02539 309 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 297 - -
Aip06g02539 309 Gene3D - 228 300 IPR013088 GO:0006355|GO:0008270
Aip06g02539 309 PANTHER GATA TRANSCRIPTION FACTOR 21 303 - -
Aip06g02539 309 MobiDBLite consensus disorder prediction 83 112 - -
Aip06g02539 309 SMART GATA_3 233 287 IPR000679 GO:0006355|GO:0043565
Aip06g02539 309 MobiDBLite consensus disorder prediction 83 127 - -
Aip06g02539 309 MobiDBLite consensus disorder prediction 169 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02539 Aip-Chr6 112532603 112534207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02539 16 301 C2C2-Gata Transcription Factor Family AT4G32890 36.770 1.30e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aip06g02539 GATA 1.4e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02539 - - adu:107494524 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02539 06 112532603 112534207 Aip06g02539 06 112532603 112534207 ECH